ChromosomeParameterisation Class Reference

#include <ChromosomeParameterisation.hh>

Inheritance diagram for ChromosomeParameterisation:

Collaboration diagram for ChromosomeParameterisation:

Public Member Functions
	ChromosomeParameterisation (const char *filename)
virtual	~ChromosomeParameterisation ()
int	GetNumRosettes ()
virtual void	ComputeTransformation (const G4int copyNo, G4VPhysicalVolume *physVol) const
virtual void	ComputeDimensions (G4Tubs &rosette, const G4int copyNo, const G4VPhysicalVolume *physVol) const
Public Member Functions inherited from G4VPVParameterisation
	G4VPVParameterisation ()
virtual	~G4VPVParameterisation ()
virtual G4VSolid *	ComputeSolid (const G4int, G4VPhysicalVolume *)
virtual G4Material *	ComputeMaterial (const G4int repNo, G4VPhysicalVolume *currentVol, const G4VTouchable *parentTouch=0)
virtual G4bool	IsNested () const
virtual G4VVolumeMaterialScanner *	GetMaterialScanner ()

Detailed Description

Definition at line 72 of file ChromosomeParameterisation.hh.

Constructor & Destructor Documentation

ChromosomeParameterisation::ChromosomeParameterisation

(

const char *

filename

)

Definition at line 53 of file ChromosomeParameterisation.cc.

                                                                          :
    G4VPVParameterisation()
{
  ifstream f(filename, ios::in);
  if (!f)
    return;

  fPositions.reserve(100);
  fRotations.reserve(100);

  while (!f.eof())
  {
    double x, y, z, rot;
    f >> x >> y >> z >> rot;
    fPositions.push_back(new G4ThreeVector(x * nanometer,
                                           y * nanometer,
                                           z * nanometer));
    fRotations.push_back(new G4RotationMatrix(0, 0, rot * degree));
  }
}

ChromosomeParameterisation::~ChromosomeParameterisation ( )

virtual

Definition at line 76 of file ChromosomeParameterisation.cc.

{
  unsigned int i;
  for (i = 0; i < fPositions.size(); i++)
    delete fPositions[i];
  for (i = 0; i < fRotations.size(); i++)
    delete fRotations[i];
}

Member Function Documentation

void ChromosomeParameterisation::ComputeDimensions ( G4Tubs &  rosette, const G4int  copyNo, const G4VPhysicalVolume *  physVol  ) const

virtual

Reimplemented from G4VPVParameterisation.

Definition at line 87 of file ChromosomeParameterisation.cc.

{

}

void ChromosomeParameterisation::ComputeTransformation ( const G4int  copyNo, G4VPhysicalVolume *  physVol  ) const

virtual

Implements G4VPVParameterisation.

Definition at line 97 of file ChromosomeParameterisation.cc.

{
  // see passive vs active method to specify
  // this transformation
  physVol->SetTranslation(*fPositions[copyNo]);
  physVol->SetRotation(fRotations[copyNo]);
}

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int ChromosomeParameterisation::GetNumRosettes ( )

inline

Definition at line 78 of file ChromosomeParameterisation.hh.

  {
    return fPositions.size();
  }

---

The documentation for this class was generated from the following files:

• source/geant4.10.03.p03/examples/extended/medical/dna/wholeNuclearDNA/include/ChromosomeParameterisation.hh
• source/geant4.10.03.p03/examples/extended/medical/dna/wholeNuclearDNA/src/ChromosomeParameterisation.cc