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G4MoleculeGun.hh
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25 //
26 // Author: Mathieu Karamitros
27 
28 // The code is developed in the framework of the ESA AO7146
29 //
30 // We would be very happy hearing from you, send us your feedback! :)
31 //
32 // In order for Geant4-DNA to be maintained and still open-source,
33 // article citations are crucial.
34 // If you use Geant4-DNA chemistry and you publish papers about your software,
35 // in addition to the general paper on Geant4-DNA:
36 //
37 // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
38 //
39 // we would be very happy if you could please also cite the following
40 // reference papers on chemistry:
41 //
42 // J. Comput. Phys. 274 (2014) 841-882
43 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508
44 
45 #ifndef MOLECULEGUN_HH_
46 #define MOLECULEGUN_HH_
47 
48 #include "G4ITGun.hh"
49 #include "globals.hh"
50 #include "G4ThreeVector.hh"
51 #include <vector>
52 #include <map>
53 #include <G4memory.hh>
54 
55 class G4Track;
59 typedef int G4ContinuousMedium;
60 
61 //------------------------------------------------------------------------------
62 
63 /*
64  * Define a specific species shoot
65  * Multiple shoots maybe be defined
66  * TODO: make the shoots fully time dependent with
67  * user access in the new framework
68  */
69 
70 class G4MoleculeShoot : public G4enable_shared_from_this<G4MoleculeShoot>
71 {
72 public:
73 
75  virtual ~G4MoleculeShoot();
76  virtual void Shoot(G4MoleculeGun*) = 0;
77 
78  template<typename TYPE> G4shared_ptr<G4MoleculeShoot> ChangeType();
79 
85 
86  static void RandomPosInBox(const G4ThreeVector& boxSize,
87  G4ThreeVector& output);
88 };
89 
90 //------------------------------------------------------------------------------
91 
92 /*
93  * Define a shoot type =
94  * track (used by the Smoluchowski code)
95  * or continuous medium (used by the gillespie code)
96  */
97 
98 template<typename TYPE>
100 {
101 public:
103  virtual ~TG4MoleculeShoot(){;}
105 
106 protected:
109 };
110 
111 template<typename TYPE>
112 G4shared_ptr<G4MoleculeShoot> G4MoleculeShoot::ChangeType()
113 {
114  G4shared_ptr<G4MoleculeShoot> output(new TG4MoleculeShoot<TYPE>);
115  output->fMoleculeName = fMoleculeName;
116  output->fPosition = fPosition;
117  output->fTime = fTime;
118  output->fNumber = fNumber;
119  output->fBoxSize = fBoxSize;
120  return output;
121 }
122 
123 
124 //------------------------------------------------------------------------------
125 
126 class G4MoleculeGun : public G4ITGun
127 {
128 public:
129  G4MoleculeGun();
130  virtual ~G4MoleculeGun();
131 
132  virtual void DefineTracks();
133 
134  /*
135  * Create a single molecule
136  * @param moleculeName name of the molecule such as recorded in molecule table
137  * @param position position where the molecule should pop up
138  * @param time time at which the molecule should pop up
139  */
140  void AddMolecule(const G4String& moleculeName,
141  const G4ThreeVector& position,
142  double time = 0);
143 
144  /*
145  * Create N molecules at a single point
146  * @param n number of molecules to create
147  * @param moleculeName name of the molecules such as recorded in molecule table
148  * @param position position where the molecules should pop up
149  * @param time time at which the molecules should pop up
150  */
151  void AddNMolecules(size_t n,
152  const G4String& moleculeName,
153  const G4ThreeVector& position,
154  double time = 0);
155 
156  /*
157  * Create N molecules in a box
158  * @param n number of molecules to create
159  * @param moleculeName name of the molecules such as recorded in molecule table
160  * @param boxCenter center of the box
161  * @param boxExtension size of the box
162  * @param time time at which the molecules should pop up
163  */
164  void AddMoleculesRandomPositionInBox(size_t n,
165  const G4String& moleculeName,
166  const G4ThreeVector& boxCenter,
167  const G4ThreeVector& boxExtension,
168  double time = 0);
169 
170  /*
171  * Create N molecules as component of the continuous medium in a box
172  * @param n number of molecules to create
173  * @param moleculeName name of the molecules such as recorded in molecule table
174  * @param boxCenter center of the box
175  * @param boxExtension size of the box
176  * @param time time at which the molecules should pop up
177  */
178 // void AddMoleculeInCMRepresentation(size_t n,
179 // const G4String& moleculeName,
180 // const G4ThreeVector& boxCenter,
181 // const G4ThreeVector& boxExtension,
182 // double time = 0);
183 
184  void AddMoleculeInCMRepresentation(size_t n,
185  const G4String& moleculeName,
186  double time = 0);
187 
188  const std::vector<G4shared_ptr<G4MoleculeShoot> >&
190  return fShoots;
191  }
192 
193  typedef std::map<G4String, int> NameNumber;
195 
196 
197  void AddMoleculeShoot(G4shared_ptr<G4MoleculeShoot>);
198 
199 protected:
200  void BuildAndPushTrack(const G4String& name,
201  const G4ThreeVector& position,
202  double time = 0);
204 
205  std::vector<G4shared_ptr<G4MoleculeShoot> > fShoots;
206  friend class G4MoleculeShoot;
207  template<class T> friend class TG4MoleculeShoot;
208 };
209 
210 #endif /* MOLECULEGUN_HH_ */
const std::vector< G4shared_ptr< G4MoleculeShoot > > & GetMoleculeShoot()
const XML_Char * name
Definition: expat.h:151
G4shared_ptr< G4MoleculeShoot > ChangeType()
virtual ~G4MoleculeShoot()
void AddMoleculeInCMRepresentation(size_t n, const G4String &moleculeName, double time=0)
void AddMoleculeShoot(G4shared_ptr< G4MoleculeShoot >)
virtual void Shoot(G4MoleculeGun *)=0
void AddMoleculesRandomPositionInBox(size_t n, const G4String &moleculeName, const G4ThreeVector &boxCenter, const G4ThreeVector &boxExtension, double time=0)
#define G4enable_shared_from_this
Definition: G4memory.hh:37
G4MoleculeGunMessenger * fpMessenger
virtual void DefineTracks()
virtual ~TG4MoleculeShoot()
void BuildAndPushTrack(const G4String &name, const G4ThreeVector &position, double time=0)
void ShootAtRandomPosition(G4MoleculeGun *)
int G4int
Definition: G4Types.hh:78
void AddMolecule(const G4String &moleculeName, const G4ThreeVector &position, double time=0)
G4ThreeVector * fBoxSize
const G4int n
static void RandomPosInBox(const G4ThreeVector &boxSize, G4ThreeVector &output)
void Shoot(G4MoleculeGun *)
void AddNMolecules(size_t n, const G4String &moleculeName, const G4ThreeVector &position, double time=0)
G4ThreeVector fPosition
virtual ~G4MoleculeGun()
double G4double
Definition: G4Types.hh:76
std::map< G4String, int > NameNumber
int G4ContinuousMedium
void ShootAtFixedPosition(G4MoleculeGun *)
G4String fMoleculeName
std::vector< G4shared_ptr< G4MoleculeShoot > > fShoots
void GetNameAndNumber(NameNumber &)