G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction. More...

#include <G4DNAMolecularReactionTable.hh>

Inheritance diagram for G4DNAMolecularReactionTable:

Collaboration diagram for G4DNAMolecularReactionTable:

Public Member Functions
virtual	~G4DNAMolecularReactionTable ()

void	SetReaction (G4double observedReactionRate, G4MolecularConfiguration reactive1, G4MolecularConfiguration reactive2)
	Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products. More...

void	SetReaction (G4DNAMolecularReactionData *)

const G4DNAMolecularReactionData *	GetReactionData (G4MolecularConfiguration , G4MolecularConfiguration ) const

const G4DNAMolecularReactionData *	GetReactionData (const G4String &, const G4String &) const

const G4DNAMolecularReactionData *	GetReaction (int reactionID) const

size_t	GetNReactions () const

const std::vector < G4MolecularConfiguration * > *	CanReactWith (G4MolecularConfiguration *) const
	Given a molecule's type, it returns with which a reaction is allowed. More...

const std::map < G4MolecularConfiguration , const G4DNAMolecularReactionData > *	GetReativesNData (G4MolecularConfiguration *) const

const std::vector< const G4DNAMolecularReactionData * > *	GetReactionData (G4MolecularConfiguration *) const

const std::map < G4MolecularConfiguration , std::map < G4MolecularConfiguration , const G4DNAMolecularReactionData * > > &	GetAllReactionData ()

const std::vector< const G4DNAMolecularReactionData * > &	GetVectorOfReactionData ()

void	ScaleReactionRateForNewTemperature (double temp_K)

void	PrintTable (G4VDNAReactionModel *=0)

Public Member Functions inherited from G4ITReactionTable
	G4ITReactionTable ()
	Default constructor. More...

virtual	~G4ITReactionTable ()
	Default destructor. More...

	G4ITReactionTable (const G4ITReactionTable &)
	Copy constructor. More...

G4ITReactionTable &	operator= (const G4ITReactionTable &)
	Assignment operator. More...

Static Public Member Functions
static G4DNAMolecularReactionTable *	GetReactionTable ()

static G4DNAMolecularReactionTable *	Instance ()

static void	DeleteInstance ()

Protected Types
typedef std::map < G4MolecularConfiguration , std::map < G4MolecularConfiguration , const G4DNAMolecularReactionData * > >	ReactionDataMap

typedef std::map < G4MolecularConfiguration , std::vector < G4MolecularConfiguration > >	ReactivesMV

typedef std::map < G4MolecularConfiguration , std::vector< const G4DNAMolecularReactionData > >	ReactionDataMV

Protected Member Functions
	G4DNAMolecularReactionTable ()

Protected Attributes
G4bool	fVerbose

ReactionDataMap	fReactionData

ReactivesMV	fReactantsMV

ReactionDataMV	fReactionDataMV

std::vector< const G4DNAMolecularReactionData * >	fVectorOfReactionData

G4ReactionTableMessenger *	fpMessenger

Static Protected Attributes
static G4DNAMolecularReactionTable *	fInstance

Detailed Description

G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction.

Definition at line 199 of file G4DNAMolecularReactionTable.hh.

Member Typedef Documentation

typedef std::map<G4MolecularConfiguration*, std::map<G4MolecularConfiguration*, const G4DNAMolecularReactionData*> > G4DNAMolecularReactionTable::ReactionDataMap

protected

Definition at line 275 of file G4DNAMolecularReactionTable.hh.

typedef std::map<G4MolecularConfiguration*, std::vector<const G4DNAMolecularReactionData*> > G4DNAMolecularReactionTable::ReactionDataMV

protected

Definition at line 279 of file G4DNAMolecularReactionTable.hh.

typedef std::map<G4MolecularConfiguration*, std::vector<G4MolecularConfiguration*> > G4DNAMolecularReactionTable::ReactivesMV

protected

Definition at line 277 of file G4DNAMolecularReactionTable.hh.

Constructor & Destructor Documentation

G4DNAMolecularReactionTable::G4DNAMolecularReactionTable ( )

protected

Definition at line 244 of file G4DNAMolecularReactionTable.cc.

References fpMessenger, and fVerbose.

Referenced by GetReactionTable(), and Instance().

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G4DNAMolecularReactionTable::~G4DNAMolecularReactionTable ( )

virtual

Definition at line 256 of file G4DNAMolecularReactionTable.cc.

References fpMessenger, fReactantsMV, fReactionData, fReactionDataMV, G4DNAMolecularReactionData::GetReactant1(), and G4DNAMolecularReactionData::GetReactant2().

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Member Function Documentation

const std::vector< G4MolecularConfiguration * > * G4DNAMolecularReactionTable::CanReactWith ( G4MolecularConfiguration * aMolecule ) const

Given a molecule's type, it returns with which a reaction is allowed.

Definition at line 545 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactantsMV, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by G4DNAMoleculeEncounterStepper::CalculateStep(), and PrintTable().

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void G4DNAMolecularReactionTable::DeleteInstance ( )

static

Definition at line 234 of file G4DNAMolecularReactionTable.cc.

References fInstance.

Referenced by G4DNAChemistryManager::Clear().

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const std::map<G4MolecularConfiguration*, std::map<G4MolecularConfiguration*, const G4DNAMolecularReactionData*> >& G4DNAMolecularReactionTable::GetAllReactionData ( )

inline

Definition at line 253 of file G4DNAMolecularReactionTable.hh.

References fReactionData.

size_t G4DNAMolecularReactionTable::GetNReactions ( ) const

inline

Definition at line 234 of file G4DNAMolecularReactionTable.hh.

References fVectorOfReactionData.

const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReaction ( int reactionID ) const

Definition at line 745 of file G4DNAMolecularReactionTable.cc.

References fVectorOfReactionData.

const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReactionData	(	G4MolecularConfiguration *	reactant1,
		G4MolecularConfiguration *	reactant2
	)		const

Definition at line 502 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by GetReactionData(), G4DNASmoluchowskiReactionModel::GetReactionRadius(), G4DNASmoluchowskiReactionModel::Initialise(), G4DNASmoluchowskiReactionModel::InitialiseToPrint(), and G4DNAMolecularReaction::MakeReaction().

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const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReactionData	(	const G4String &	mol1,
		const G4String &	mol2
	)		const

Definition at line 667 of file G4DNAMolecularReactionTable.cc.

References G4MoleculeTable::GetConfiguration(), G4MoleculeTable::GetMoleculeTable(), and GetReactionData().

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const std::vector< const G4DNAMolecularReactionData * > * G4DNAMolecularReactionTable::GetReactionData ( G4MolecularConfiguration * molecule ) const

Definition at line 641 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionDataMV, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

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G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::GetReactionTable ( )

static

Definition at line 212 of file G4DNAMolecularReactionTable.cc.

References fInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAMolecularStepByStepModel::Initialize(), G4DNAChemistryManager::InitializeMaster(), and G4DNAChemistryManager::InitializeThread().

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const std::map< G4MolecularConfiguration *, const G4DNAMolecularReactionData * > * G4DNAMolecularReactionTable::GetReativesNData ( G4MolecularConfiguration * molecule ) const

Definition at line 595 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

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const std::vector<const G4DNAMolecularReactionData*>& G4DNAMolecularReactionTable::GetVectorOfReactionData ( )

inline

Definition at line 259 of file G4DNAMolecularReactionTable.hh.

References fVectorOfReactionData.

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::Instance ( void )

static

Definition at line 223 of file G4DNAMolecularReactionTable.cc.

References fInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::PrintTable ( G4VDNAReactionModel * pReactionModel = 0 )

Definition at line 326 of file G4DNAMolecularReactionTable.cc.

References CanReactWith(), G4UIcommand::ConvertToString(), fReactantsMV, fReactionData, G4cout, G4endl, G4MolecularConfiguration::GetName(), G4DNAMolecularReactionData::GetNbProducts(), G4DNAMolecularReactionData::GetObservedReactionRateConstant(), G4DNAMolecularReactionData::GetProduct(), G4VDNAReactionModel::GetReactionRadius(), G4VDNAReactionModel::GetReactionTable(), G4VDNAReactionModel::InitialiseToPrint(), left, m3, mole, n, nanometer, s, G4VDNAReactionModel::SetReactionTable(), and TRUE.

Referenced by G4EmDNAChemistry::ConstructTimeStepModel(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::ScaleReactionRateForNewTemperature ( double temp_K )

Definition at line 713 of file G4DNAMolecularReactionTable.cc.

References fVectorOfReactionData.

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::SetReaction	(	G4double	observedReactionRate,
		G4MolecularConfiguration *	reactive1,
		G4MolecularConfiguration *	reactive2
	)

Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products.

Definition at line 315 of file G4DNAMolecularReactionTable.cc.

Referenced by G4EmDNAChemistry::ConstructReactionTable(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::SetReaction ( G4DNAMolecularReactionData * reactionData )

Definition at line 294 of file G4DNAMolecularReactionTable.cc.

References fReactantsMV, fReactionData, fReactionDataMV, fVectorOfReactionData, G4DNAMolecularReactionData::GetReactant1(), and G4DNAMolecularReactionData::GetReactant2().

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Member Data Documentation

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::fInstance

staticprotected

Definition at line 203 of file G4DNAMolecularReactionTable.hh.

Referenced by DeleteInstance(), GetReactionTable(), and Instance().

G4ReactionTableMessenger* G4DNAMolecularReactionTable::fpMessenger

protected

Definition at line 285 of file G4DNAMolecularReactionTable.hh.

Referenced by G4DNAMolecularReactionTable(), and ~G4DNAMolecularReactionTable().

ReactivesMV G4DNAMolecularReactionTable::fReactantsMV

protected

Definition at line 282 of file G4DNAMolecularReactionTable.hh.

Referenced by CanReactWith(), PrintTable(), SetReaction(), and ~G4DNAMolecularReactionTable().

ReactionDataMap G4DNAMolecularReactionTable::fReactionData

protected

Definition at line 281 of file G4DNAMolecularReactionTable.hh.

Referenced by GetAllReactionData(), GetReactionData(), GetReativesNData(), PrintTable(), SetReaction(), and ~G4DNAMolecularReactionTable().

ReactionDataMV G4DNAMolecularReactionTable::fReactionDataMV

protected

Definition at line 283 of file G4DNAMolecularReactionTable.hh.

Referenced by GetReactionData(), SetReaction(), and ~G4DNAMolecularReactionTable().

std::vector<const G4DNAMolecularReactionData*> G4DNAMolecularReactionTable::fVectorOfReactionData

protected

Definition at line 284 of file G4DNAMolecularReactionTable.hh.

Referenced by GetNReactions(), GetReaction(), GetVectorOfReactionData(), ScaleReactionRateForNewTemperature(), and SetReaction().

G4bool G4DNAMolecularReactionTable::fVerbose

protected

Definition at line 270 of file G4DNAMolecularReactionTable.hh.

Referenced by CanReactWith(), G4DNAMolecularReactionTable(), and GetReativesNData().

The documentation for this class was generated from the following files:

geant4.10.03/source/processes/electromagnetic/dna/utils/include/G4DNAMolecularReactionTable.hh
geant4.10.03/source/processes/electromagnetic/dna/utils/src/G4DNAMolecularReactionTable.cc

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation