#include <G4MoleculeTable.hh>

Collaboration diagram for G4MoleculeTable:

Public Member Functions
virtual	~G4MoleculeTable ()

G4MoleculeDefinition *	CreateMoleculeDefinition (const G4String &userIdentifier, double diffusion_coefficient)

G4MolecularConfiguration *	CreateConfiguration (const G4String &userIdentifier, const G4MoleculeDefinition *molDef, const G4String &configurationLabel, const G4ElectronOccupancy &eOcc)

G4MolecularConfiguration *	CreateConfiguration (const G4String &userIdentifier, G4MoleculeDefinition *, int charge, double diffusion_coefficient=-1)

G4MolecularConfiguration *	CreateConfiguration (const G4String &userIdentifier, G4MoleculeDefinition *)

G4MolecularConfiguration *	CreateConfiguration (const G4String &userIdentifier, G4MoleculeDefinition *, const G4String &configurationLabel, int charge=0)

G4MoleculeDefinition *	GetMoleculeDefinition (const G4String &, bool mustExist=true)

G4MolecularConfiguration *	GetConfiguration (const G4String &, bool mustExist=true)

G4MolecularConfiguration *	GetConfiguration (G4int id)

void	Insert (G4MoleculeDefinition *)

void	Finalize (G4MoleculeDefinition *)

void	Finalize ()

G4MoleculeDefinitionIterator	GetDefintionIterator ()

G4ConfigurationIterator	GetConfigurationIterator ()

void	PrepareMolecularConfiguration ()

int	GetNumberOfDefinedSpecies ()

Static Public Member Functions
static G4MoleculeTable *	Instance ()

static G4MoleculeTable *	GetMoleculeTable ()

Protected Types
typedef std::map< G4String, G4MoleculeDefinition * >	MoleculeDefTable

Protected Member Functions
	G4MoleculeTable ()

Protected Attributes
MoleculeDefTable	fMoleculeDefTable

Static Protected Attributes
static G4MoleculeTable *	fpgMoleculeTable

Detailed Description

Definition at line 58 of file G4MoleculeTable.hh.

Member Typedef Documentation

typedef std::map<G4String, G4MoleculeDefinition*> G4MoleculeTable::MoleculeDefTable

protected

Definition at line 131 of file G4MoleculeTable.hh.

Constructor & Destructor Documentation

G4MoleculeTable::~G4MoleculeTable ( )

virtual

Definition at line 47 of file G4MoleculeTable.cc.

G4MoleculeTable::G4MoleculeTable ( )

protected

Definition at line 41 of file G4MoleculeTable.cc.

Referenced by Instance().

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Member Function Documentation

G4MolecularConfiguration * G4MoleculeTable::CreateConfiguration	(	const G4String &	userIdentifier,
		const G4MoleculeDefinition *	molDef,
		const G4String &	configurationLabel,
		const G4ElectronOccupancy &	eOcc
	)

Definition at line 233 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::CreateMolecularConfiguration().

Referenced by G4EmDNAChemistry::ConstructMolecule().

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G4MolecularConfiguration * G4MoleculeTable::CreateConfiguration	(	const G4String &	userIdentifier,
		G4MoleculeDefinition *	molDef,
		int	charge,
		double	diffusion_coefficient = `-1`
	)

Definition at line 209 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::CreateMolecularConfiguration(), and G4MolecularConfiguration::SetDiffusionCoefficient().

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G4MolecularConfiguration * G4MoleculeTable::CreateConfiguration	(	const G4String &	userIdentifier,
		G4MoleculeDefinition *	molDef
	)

Definition at line 173 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::CreateMolecularConfiguration().

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G4MolecularConfiguration * G4MoleculeTable::CreateConfiguration	(	const G4String &	userIdentifier,
		G4MoleculeDefinition *	molDef,
		const G4String &	configurationLabel,
		int	charge = `0`
	)

Definition at line 189 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::CreateMolecularConfiguration().

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G4MoleculeDefinition * G4MoleculeTable::CreateMoleculeDefinition	(	const G4String &	userIdentifier,
		double	diffusion_coefficient
	)

Definition at line 69 of file G4MoleculeTable.cc.

void G4MoleculeTable::Finalize ( G4MoleculeDefinition * )

inline

Definition at line 112 of file G4MoleculeTable.hh.

Referenced by G4MoleculeDefinition::Finalize(), and G4DNAChemistryManager::Run().

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void G4MoleculeTable::Finalize ( )

Definition at line 252 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::FinalizeAll().

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G4MolecularConfiguration * G4MoleculeTable::GetConfiguration	(	const G4String &	name,
		bool	mustExist = `true`
	)

Definition at line 105 of file G4MoleculeTable.cc.

References FatalException, G4endl, G4Exception(), and G4MolecularConfiguration::GetMolecularConfiguration().

Referenced by G4MoleculeGun::BuildAndPushTrack(), G4EmDNAChemistry::ConstructDissociationChannels(), G4EmDNAChemistry::ConstructReactionTable(), G4DNAMolecularReactionTable::GetReactionData(), G4DNAElectronHoleRecombination::IsApplicable(), G4DNAMolecularMaterial::SetMolecularConfiguration(), G4DNAMolecularReactionData::SetReactant1(), G4DNAMolecularReactionData::SetReactant2(), and G4DNAMolecularReactionData::SetReactants().

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G4MolecularConfiguration * G4MoleculeTable::GetConfiguration ( G4int id )

Definition at line 128 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::GetMolecularConfiguration().

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G4ConfigurationIterator G4MoleculeTable::GetConfigurationIterator ( )

Definition at line 259 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::GetUserIDTable().

Referenced by G4MoleculeCounter::Initialize(), and G4MolecularConfiguration::ScaleAllDiffusionCoefficientsOnWater().

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G4MoleculeDefinitionIterator G4MoleculeTable::GetDefintionIterator ( )

inline

Definition at line 116 of file G4MoleculeTable.hh.

References fMoleculeDefTable.

Referenced by G4VUserChemistryList::BuildPhysicsTable(), and G4EmDNAChemistry::ConstructProcess().

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G4MoleculeDefinition * G4MoleculeTable::GetMoleculeDefinition	(	const G4String &	name,
		bool	mustExist = `true`
	)

Definition at line 79 of file G4MoleculeTable.cc.

References FatalException, fMoleculeDefTable, G4endl, and G4Exception().

Referenced by G4DNAElectronHoleRecombination::IsApplicable(), and G4MolecularConfiguration::Unserialize().

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G4MoleculeTable * G4MoleculeTable::GetMoleculeTable ( )

static

Definition at line 61 of file G4MoleculeTable.cc.

References Instance().

Referenced by G4DNAMolecularReactionTable::GetReactionData().

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int G4MoleculeTable::GetNumberOfDefinedSpecies ( )

Definition at line 266 of file G4MoleculeTable.cc.

References G4MolecularConfiguration::GetNumberOfSpecies().

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void G4MoleculeTable::Insert ( G4MoleculeDefinition * moleculeDefinition )

Definition at line 138 of file G4MoleculeTable.cc.

References FatalException, fMoleculeDefTable, G4endl, G4Exception(), G4MoleculeDefinition::GetName(), and G4InuclParticleNames::name().

Referenced by G4MoleculeDefinition::G4MoleculeDefinition().

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G4MoleculeTable * G4MoleculeTable::Instance ( void )

static

Definition at line 53 of file G4MoleculeTable.cc.

References fpgMoleculeTable, and G4MoleculeTable().

Referenced by G4MolecularDissociationChannel::AddProduct(), G4DNAMolecularReactionData::AddProduct(), G4MoleculeGun::BuildAndPushTrack(), G4VUserChemistryList::BuildPhysicsTable(), G4EmDNAChemistry::ConstructDissociationChannels(), G4EmDNAChemistry::ConstructMolecule(), G4EmDNAChemistry::ConstructProcess(), G4EmDNAChemistry::ConstructReactionTable(), G4MoleculeDefinition::Finalize(), G4MoleculeDefinition::G4MoleculeDefinition(), GetMoleculeTable(), G4MoleculeCounter::Initialize(), G4DNAElectronHoleRecombination::IsApplicable(), G4DNAChemistryManager::Notify(), G4DNAChemistryManager::Run(), G4MolecularConfiguration::ScaleAllDiffusionCoefficientsOnWater(), G4DNAMolecularMaterial::SetMolecularConfiguration(), G4DNAMolecularReactionData::SetReactant1(), G4DNAMolecularReactionData::SetReactant2(), G4DNAMolecularReactionData::SetReactants(), and G4MolecularConfiguration::Unserialize().

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void G4MoleculeTable::PrepareMolecularConfiguration ( )

Definition at line 160 of file G4MoleculeTable.cc.

References fMoleculeDefTable, and G4MolecularConfiguration::GetOrCreateMolecularConfiguration().

Referenced by G4DNAChemistryManager::Notify().

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Member Data Documentation

MoleculeDefTable G4MoleculeTable::fMoleculeDefTable

protected

Definition at line 133 of file G4MoleculeTable.hh.

Referenced by GetDefintionIterator(), GetMoleculeDefinition(), Insert(), and PrepareMolecularConfiguration().

G4MoleculeTable * G4MoleculeTable::fpgMoleculeTable

staticprotected

Definition at line 130 of file G4MoleculeTable.hh.

Referenced by Instance().

The documentation for this class was generated from the following files:

geant4.10.03/source/processes/electromagnetic/dna/molecules/management/include/G4MoleculeTable.hh
geant4.10.03/source/processes/electromagnetic/dna/molecules/management/src/G4MoleculeTable.cc

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation