Given a molecule G4DNAMoleculeEncounterStepper will calculate for its possible reactants what will be the minimum encounter time and the associated molecules. More...

#include <G4DNAMoleculeEncounterStepper.hh>

Inheritance diagram for G4DNAMoleculeEncounterStepper:

Collaboration diagram for G4DNAMoleculeEncounterStepper:

Classes
class	Utils

Public Member Functions
	G4DNAMoleculeEncounterStepper ()

virtual	~G4DNAMoleculeEncounterStepper ()

	G4DNAMoleculeEncounterStepper (const G4DNAMoleculeEncounterStepper &)

virtual void	Prepare ()

virtual G4double	CalculateStep (const G4Track &, const G4double &)

void	SetReactionModel (G4VDNAReactionModel *)

G4VDNAReactionModel *	GetReactionModel ()

void	SetVerbose (int)

Public Member Functions inherited from G4VITTimeStepComputer
	G4VITTimeStepComputer ()

virtual	~G4VITTimeStepComputer ()

	G4VITTimeStepComputer (const G4VITTimeStepComputer &)

G4VITTimeStepComputer &	operator= (const G4VITTimeStepComputer &other)

virtual void	Initialize ()
	This macro defined in AddClone_def. More...

G4TrackVectorHandle	GetReactants ()

virtual void	ResetReactants ()

G4double	GetSampledMinTimeStep ()

void	SetReactionTable (const G4ITReactionTable *)

const G4ITReactionTable *	GetReactionTable ()

Private Member Functions
void	InitializeForNewTrack ()

void	CheckAndRecordResults (const Utils &, G4KDTreeResultHandle &)

G4DNAMoleculeEncounterStepper &	operator= (const G4DNAMoleculeEncounterStepper &)

Private Attributes
G4bool	fHasAlreadyReachedNullTime

const G4DNAMolecularReactionTable *&	fMolecularReactionTable

G4VDNAReactionModel *	fReactionModel

G4int	fVerbose

Additional Inherited Members
Static Public Member Functions inherited from G4VITTimeStepComputer
static void	SetTimes (const G4double &, const G4double &)

Protected Attributes inherited from G4VITTimeStepComputer
G4double	fSampledMinTimeStep

G4TrackVectorHandle	fReactants

const G4ITReactionTable *	fpReactionTable

Static Protected Attributes inherited from G4VITTimeStepComputer
static G4ThreadLocal G4double	fCurrentGlobalTime = -1

static G4ThreadLocal G4double	fUserMinTimeStep = -1

Detailed Description

Given a molecule G4DNAMoleculeEncounterStepper will calculate for its possible reactants what will be the minimum encounter time and the associated molecules.

This model includes dynamical time steps as explained in "Computer-Aided Stochastic Modeling of the Radiolysis of Liquid Water", V. Michalik, M. Begusová, E. A. Bigildeev, Radiation Research, Vol. 149, No. 3 (Mar., 1998), pp. 224-236

Definition at line 70 of file G4DNAMoleculeEncounterStepper.hh.

Constructor & Destructor Documentation

G4DNAMoleculeEncounterStepper::G4DNAMoleculeEncounterStepper ( )

Definition at line 68 of file G4DNAMoleculeEncounterStepper.cc.

References fHasAlreadyReachedNullTime, and fVerbose.

G4DNAMoleculeEncounterStepper::~G4DNAMoleculeEncounterStepper ( )

virtual

Definition at line 88 of file G4DNAMoleculeEncounterStepper.cc.

G4DNAMoleculeEncounterStepper::G4DNAMoleculeEncounterStepper ( const G4DNAMoleculeEncounterStepper & right )

Definition at line 92 of file G4DNAMoleculeEncounterStepper.cc.

References fHasAlreadyReachedNullTime, fMolecularReactionTable, fReactionModel, and fVerbose.

Member Function Documentation

G4double G4DNAMoleculeEncounterStepper::CalculateStep	(	const G4Track &	trackA,
		const G4double &	userMinTimeStep
	)

virtual

Implements G4VITTimeStepComputer.

Definition at line 143 of file G4DNAMoleculeEncounterStepper.cc.

References G4DNAMolecularReactionTable::CanReactWith(), CheckAndRecordResults(), G4DNAMoleculeEncounterStepper::Utils::Constant, DBL_MAX, fHasAlreadyReachedNullTime, fMolecularReactionTable, G4VITTimeStepComputer::fReactants, fReactionModel, G4VITTimeStepComputer::fSampledMinTimeStep, G4VITTimeStepComputer::fUserMinTimeStep, fVerbose, G4BestUnit, G4cout, G4endl, G4Molecule::GetMolecularConfiguration(), GetMolecule(), G4MolecularConfiguration::GetMoleculeID(), G4Molecule::GetName(), G4VDNAReactionModel::GetReactionRadius(), G4Track::GetTrackID(), G4VDNAReactionModel::Initialise(), InitializeForNewTrack(), and G4ITFinder< T >::Instance().

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void G4DNAMoleculeEncounterStepper::CheckAndRecordResults	(	const Utils &	utils,
		G4KDTreeResultHandle &	results
	)

private

Definition at line 374 of file G4DNAMoleculeEncounterStepper.cc.

References fAlive, FatalErrorInArgument, G4VITTimeStepComputer::fReactants, fVerbose, G4BestUnit, G4cout, G4endl, G4Exception(), G4Track::GetGlobalTime(), G4Molecule::GetName(), G4MolecularConfiguration::GetName(), G4Track::GetPosition(), G4IT::GetTrack(), G4Track::GetTrackID(), G4Track::GetTrackStatus(), G4DNAMoleculeEncounterStepper::Utils::moleculeA, G4DNAMoleculeEncounterStepper::Utils::moleculeB, and G4DNAMoleculeEncounterStepper::Utils::trackA.

Referenced by CalculateStep().

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G4VDNAReactionModel * G4DNAMoleculeEncounterStepper::GetReactionModel ( )

inline

Definition at line 132 of file G4DNAMoleculeEncounterStepper.hh.

References fReactionModel.

void G4DNAMoleculeEncounterStepper::InitializeForNewTrack ( )

private

Definition at line 127 of file G4DNAMoleculeEncounterStepper.cc.

References DBL_MAX, fHasAlreadyReachedNullTime, G4VITTimeStepComputer::fReactants, and G4VITTimeStepComputer::fSampledMinTimeStep.

Referenced by CalculateStep().

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G4DNAMoleculeEncounterStepper & G4DNAMoleculeEncounterStepper::operator= ( const G4DNAMoleculeEncounterStepper & rhs )

private

Definition at line 78 of file G4DNAMoleculeEncounterStepper.cc.

References fHasAlreadyReachedNullTime, fMolecularReactionTable, fReactionModel, and fVerbose.

void G4DNAMoleculeEncounterStepper::Prepare ( )

virtual

Reimplemented from G4VITTimeStepComputer.

Definition at line 103 of file G4DNAMoleculeEncounterStepper.cc.

References G4cout, G4endl, G4ITFinder< T >::Instance(), G4MemStat::MemoryUsage(), G4VITTimeStepComputer::Prepare(), and G4ITFinder< T >::UpdatePositionMap().

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void G4DNAMoleculeEncounterStepper::SetReactionModel ( G4VDNAReactionModel * reactionModel )

inline

Definition at line 127 of file G4DNAMoleculeEncounterStepper.hh.

References fReactionModel.

void G4DNAMoleculeEncounterStepper::SetVerbose ( int flag )

inline

Definition at line 137 of file G4DNAMoleculeEncounterStepper.hh.

References fVerbose.

Member Data Documentation

G4bool G4DNAMoleculeEncounterStepper::fHasAlreadyReachedNullTime

private

Definition at line 99 of file G4DNAMoleculeEncounterStepper.hh.

Referenced by CalculateStep(), G4DNAMoleculeEncounterStepper(), InitializeForNewTrack(), and operator=().

const G4DNAMolecularReactionTable*& G4DNAMoleculeEncounterStepper::fMolecularReactionTable

private

Definition at line 102 of file G4DNAMoleculeEncounterStepper.hh.

Referenced by CalculateStep(), G4DNAMoleculeEncounterStepper(), and operator=().

G4VDNAReactionModel* G4DNAMoleculeEncounterStepper::fReactionModel

private

Definition at line 103 of file G4DNAMoleculeEncounterStepper.hh.

Referenced by CalculateStep(), G4DNAMoleculeEncounterStepper(), GetReactionModel(), operator=(), and SetReactionModel().

G4int G4DNAMoleculeEncounterStepper::fVerbose

private

Definition at line 104 of file G4DNAMoleculeEncounterStepper.hh.

Referenced by CalculateStep(), CheckAndRecordResults(), G4DNAMoleculeEncounterStepper(), operator=(), and SetVerbose().

The documentation for this class was generated from the following files:

geant4.10.02.p02/source/processes/electromagnetic/dna/models/include/G4DNAMoleculeEncounterStepper.hh
geant4.10.02.p02/source/processes/electromagnetic/dna/models/src/G4DNAMoleculeEncounterStepper.cc

Classes

Public Member Functions

Private Member Functions

Private Attributes

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation