PassiveProtonBeamLine.cc

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//
// This is the *BASIC* version of Hadrontherapy, a Geant4-based application
// See more at: http://g4advancedexamples.lngs.infn.it/Examples/hadrontherapy
//
// Visit the Hadrontherapy web site (http://www.lns.infn.it/link/Hadrontherapy) to request 
// the *COMPLETE* version of this program, together with its documentation;
// Hadrontherapy (both basic and full version) are supported by the Italian INFN
// Institute in the framework of the MC-INFN Group
//

#include "globals.hh"
#include "G4SystemOfUnits.hh"
#include "G4Box.hh"
#include "G4Tubs.hh"
#include "G4VisAttributes.hh"
#include "G4Colour.hh"
#include "G4RunManager.hh"
#include "G4LogicalVolume.hh"
#include "G4PVPlacement.hh"
#include "G4RotationMatrix.hh"
#include "G4NistManager.hh"
#include "G4NistElementBuilder.hh"
#include "HadrontherapyDetectorConstruction.hh"
#include "HadrontherapyModulator.hh"
#include "PassiveProtonBeamLine.hh"
#include "PassiveProtonBeamLineMessenger.hh"



PassiveProtonBeamLine::PassiveProtonBeamLine():
  modulator(0), physicalTreatmentRoom(0),hadrontherapyDetectorConstruction(0),
  physiBeamLineSupport(0), physiBeamLineCover(0), physiBeamLineCover2(0), 
  firstScatteringFoil(0), physiFirstScatteringFoil(0), physiKaptonWindow(0), 
  solidStopper(0), physiStopper(0), 
  secondScatteringFoil(0), physiSecondScatteringFoil(0),
  physiFirstCollimator(0), solidRangeShifterBox(0), logicRangeShifterBox(0),
  physiRangeShifterBox(0), physiSecondCollimator(0),
  physiFirstCollimatorModulatorBox(0),
  physiHoleFirstCollimatorModulatorBox(0),
  physiSecondCollimatorModulatorBox(0),
  physiHoleSecondCollimatorModulatorBox(0), 
  physiMOPIMotherVolume(0),
  physiFirstMonitorLayer1(0), physiFirstMonitorLayer2(0),
  physiFirstMonitorLayer3(0), physiFirstMonitorLayer4(0),
  physiSecondMonitorLayer1(0), physiSecondMonitorLayer2(0),
  physiSecondMonitorLayer3(0), physiSecondMonitorLayer4(0),
  physiNozzleSupport(0), //physiHoleNozzleSupport(0),
  physiBrassTube(0),
  solidFinalCollimator(0),
  physiFinalCollimator(0)
{  

  // Messenger to change parameters of the passiveProtonBeamLine geometry
  passiveMessenger = new PassiveProtonBeamLineMessenger(this);

//***************************** PW ***************************************

  static G4String ROGeometryName = "DetectorROGeometry";
  RO = new HadrontherapyDetectorROGeometry(ROGeometryName);
  
  

  G4cout << "Going to register Parallel world...";
  RegisterParallelWorld(RO);
  G4cout << "... done" << G4endl;
//***************************** PW ***************************************

}
PassiveProtonBeamLine::~PassiveProtonBeamLine()
{
  delete passiveMessenger;
  delete hadrontherapyDetectorConstruction;
}

G4VPhysicalVolume* PassiveProtonBeamLine::Construct()
{ 
   // Sets default geometry and materials
  SetDefaultDimensions();
  
  // Construct the whole Passive Beam Line 
  ConstructPassiveProtonBeamLine();


//***************************** PW ***************************************
  if (!hadrontherapyDetectorConstruction)

//***************************** PW ***************************************


  // HadrontherapyDetectorConstruction builds ONLY the phantom and the detector with its associated ROGeometry
   hadrontherapyDetectorConstruction = new HadrontherapyDetectorConstruction(physicalTreatmentRoom);
 

 //***************************** PW ***************************************

 hadrontherapyDetectorConstruction->InitializeDetectorROGeometry(RO,hadrontherapyDetectorConstruction->GetDetectorToWorldPosition());

//***************************** PW ***************************************
 
 

  return physicalTreatmentRoom;
}

// In the following method the DEFAULTS used in the geometry of 
// passive beam line are provided
// HERE THE USER CAN CHANGE THE GEOMETRY CHARACTERISTICS OF BEAM
// LINE ELEMENTS, ALTERNATIVELY HE/SHE CAN USE THE MACRO FILE (IF A 
// MESSENGER IS PROVIDED)
//
// DEFAULT MATERIAL ARE ALSO PROVIDED   
// and COLOURS ARE ALSO DEFINED
// ----------------------------------------------------------
void PassiveProtonBeamLine::SetDefaultDimensions()
{
  // Set of coulors that can be used
  white = new G4VisAttributes( G4Colour());
  white -> SetVisibility(true);
  white -> SetForceSolid(true);
    
  blue = new G4VisAttributes(G4Colour(0. ,0. ,1.));
  blue -> SetVisibility(true);
  blue -> SetForceSolid(true);
    
  gray = new G4VisAttributes( G4Colour(0.5, 0.5, 0.5 ));
  gray-> SetVisibility(true);
  gray-> SetForceSolid(true);
    
  red = new G4VisAttributes(G4Colour(1. ,0. ,0.));
  red-> SetVisibility(true);
  red-> SetForceSolid(true);
    
  yellow = new G4VisAttributes(G4Colour(1., 1., 0. ));
  yellow-> SetVisibility(true);
  yellow-> SetForceSolid(true);
    
  green = new G4VisAttributes( G4Colour(25/255. , 255/255. ,  25/255. ));
  green -> SetVisibility(true);
  green -> SetForceSolid(true);
    
  darkGreen = new G4VisAttributes( G4Colour(0/255. , 100/255. ,  0/255. ));
  darkGreen -> SetVisibility(true);
  darkGreen -> SetForceSolid(true);
        
  darkOrange3 = new G4VisAttributes( G4Colour(205/255. , 102/255. ,  000/255. ));
  darkOrange3 -> SetVisibility(true);
  darkOrange3 -> SetForceSolid(true);
    
  skyBlue = new G4VisAttributes( G4Colour(135/255. , 206/255. ,  235/255. ));
  skyBlue -> SetVisibility(true);
  skyBlue -> SetForceSolid(true);
  

  // VACUUM PIPE: first track of the beam line is inside vacuum;
  // The PIPE contains the FIRST SCATTERING FOIL and the KAPTON WINDOW
  G4double defaultVacuumZoneXSize = 100.0 *mm;
  vacuumZoneXSize = defaultVacuumZoneXSize;

  G4double defaultVacuumZoneYSize = 52.5 *mm;
  vacuumZoneYSize = defaultVacuumZoneYSize;

  G4double defaultVacuumZoneZSize = 52.5 *mm;
  vacuumZoneZSize = defaultVacuumZoneZSize;

  G4double defaultVacuumZoneXPosition = -3010.0 *mm;
  vacuumZoneXPosition = defaultVacuumZoneXPosition;

  // FIRST SCATTERING FOIL: a thin foil performing a first scattering
  // of the original beam
  G4double defaultFirstScatteringFoilXSize = 0.0075 *mm;
  firstScatteringFoilXSize = defaultFirstScatteringFoilXSize; 

  G4double defaultFirstScatteringFoilYSize = 52.5   *mm;
  firstScatteringFoilYSize = defaultFirstScatteringFoilYSize;

  G4double defaultFirstScatteringFoilZSize = 52.5   *mm;
  firstScatteringFoilZSize = defaultFirstScatteringFoilZSize;

  G4double defaultFirstScatteringFoilXPosition = 0.0 *mm;
  firstScatteringFoilXPosition = defaultFirstScatteringFoilXPosition;

  // KAPTON WINDOW: it prmits the passage of the beam from vacuum to air
  G4double defaultKaptonWindowXSize = 0.010*mm;
  kaptonWindowXSize = defaultKaptonWindowXSize;

  G4double defaultKaptonWindowYSize = 5.25*cm;
  kaptonWindowYSize = defaultKaptonWindowYSize;

  G4double defaultKaptonWindowZSize = 5.25*cm;
  kaptonWindowZSize = defaultKaptonWindowZSize;

  G4double defaultKaptonWindowXPosition = 100.0*mm - defaultKaptonWindowXSize;
  kaptonWindowXPosition = defaultKaptonWindowXPosition;

  // STOPPER: is a small cylinder able to stop the central component
  // of the beam (having a gaussian shape). It is connected to the SECON SCATTERING FOIL
  // and represent the second element of the scattering system
  G4double defaultInnerRadiusStopper = 0.*cm;
  innerRadiusStopper = defaultInnerRadiusStopper;

  G4double defaultHeightStopper = 3.5*mm;
  heightStopper = defaultHeightStopper;

  G4double defaultStartAngleStopper = 0.*deg;
  startAngleStopper = defaultStartAngleStopper;

  G4double defaultSpanningAngleStopper = 360.*deg;
  spanningAngleStopper = defaultSpanningAngleStopper;

  G4double defaultStopperXPosition = -2705.0 *mm;
  stopperXPosition = defaultStopperXPosition;

  G4double defaultStopperYPosition = 0.*m;
  stopperYPosition = defaultStopperYPosition;

  G4double defaultStopperZPosition = 0.*m;
  stopperZPosition = defaultStopperZPosition;

  G4double defaultOuterRadiusStopper = 2 *mm;
  outerRadiusStopper = defaultOuterRadiusStopper; 

  // SECOND SCATTERING FOIL: it is another thin foil and provides the
  // final diffusion of the beam. It represents the third element of the scattering
  // system;
  G4double defaultSecondScatteringFoilXSize = 0.0125 *mm;  
  secondScatteringFoilXSize = defaultSecondScatteringFoilXSize;

  G4double defaultSecondScatteringFoilYSize = 52.5   *mm;
  secondScatteringFoilYSize = defaultSecondScatteringFoilYSize;

  G4double defaultSecondScatteringFoilZSize = 52.5   *mm;
  secondScatteringFoilZSize = defaultSecondScatteringFoilZSize;

  G4double defaultSecondScatteringFoilXPosition = defaultStopperXPosition + defaultHeightStopper + defaultSecondScatteringFoilXSize;
  secondScatteringFoilXPosition = defaultSecondScatteringFoilXPosition;

  G4double defaultSecondScatteringFoilYPosition =  0 *mm;
  secondScatteringFoilYPosition = defaultSecondScatteringFoilYPosition;

  G4double defaultSecondScatteringFoilZPosition =  0 *mm;
  secondScatteringFoilZPosition = defaultSecondScatteringFoilZPosition;

  // RANGE SHIFTER: is a slab of PMMA acting as energy degreader of 
  // primary beam

  //Default material of the range shifter

  G4double defaultRangeShifterXSize = 5. *mm; 
  rangeShifterXSize = defaultRangeShifterXSize;

  G4double defaultRangeShifterYSize = 176. *mm; 
  rangeShifterYSize = defaultRangeShifterYSize;

  G4double defaultRangeShifterZSize = 176. *mm; 
  rangeShifterZSize = defaultRangeShifterZSize;

  G4double defaultRangeShifterXPosition = -2393.0 *mm;
  rangeShifterXPosition = defaultRangeShifterXPosition; 

  G4double defaultRangeShifterYPosition = 0. *mm;
  rangeShifterYPosition = defaultRangeShifterYPosition; 

  G4double defaultRangeShifterZPosition = 0. *mm;
  rangeShifterZPosition = defaultRangeShifterZPosition; 

  // MOPI DETECTOR: two orthogonal microstrip gas detectors developed 
  // by the INFN Section of Turin in collaboration with some 
  // of the author of this example. It permits the 
  // on-line check of the beam simmetry via the signal 
  // integration of the collected charge for each strip.    

  // Mother volume of MOPI

  G4double defaultMOPIMotherVolumeXSize = 12127.0 *um;
  MOPIMotherVolumeXSize = defaultMOPIMotherVolumeXSize;

  G4double defaultMOPIMotherVolumeYSize = 40.0 *cm;
  MOPIMotherVolumeYSize = defaultMOPIMotherVolumeYSize;

  G4double defaultMOPIMotherVolumeZSize = 40.0 *cm;
  MOPIMotherVolumeZSize = defaultMOPIMotherVolumeZSize;

  G4double defaultMOPIMotherVolumeXPosition = -1000.0 *mm;
  MOPIMotherVolumeXPosition = defaultMOPIMotherVolumeXPosition;

  G4double defaultMOPIMotherVolumeYPosition = 0.0 *mm;
  MOPIMotherVolumeYPosition = defaultMOPIMotherVolumeYPosition;

  G4double defaultMOPIMotherVolumeZPosition = 0.0 *mm;
  MOPIMotherVolumeYPosition = defaultMOPIMotherVolumeZPosition;

  // First Kapton Layer of MOPI
  G4double defaultMOPIFirstKaptonLayerXSize = 35 *um; 
  MOPIFirstKaptonLayerXSize = defaultMOPIFirstKaptonLayerXSize;

  G4double defaultMOPIFirstKaptonLayerYSize = 30 *cm; 
  MOPIFirstKaptonLayerYSize = defaultMOPIFirstKaptonLayerYSize;
  
  G4double defaultMOPIFirstKaptonLayerZSize = 30 *cm; 
  MOPIFirstKaptonLayerZSize = defaultMOPIFirstKaptonLayerZSize;

  G4double defaultMOPIFirstKaptonLayerXPosition = -(MOPIMotherVolumeXSize/2 - (MOPIFirstKaptonLayerXSize/2));
  MOPIFirstKaptonLayerXPosition = defaultMOPIFirstKaptonLayerXPosition;

  G4double defaultMOPIFirstKaptonLayerYPosition = 0.0 *mm;
  MOPIFirstKaptonLayerYPosition = defaultMOPIFirstKaptonLayerYPosition;
  
  G4double defaultMOPIFirstKaptonLayerZPosition = 0.0 *mm;
  MOPIFirstKaptonLayerZPosition = defaultMOPIFirstKaptonLayerZPosition;

  //First Aluminum  Layer of MOPI
  G4double defaultMOPIFirstAluminumLayerXSize = 15 *um; 
  MOPIFirstAluminumLayerXSize = defaultMOPIFirstAluminumLayerXSize;
  
  G4double defaultMOPIFirstAluminumLayerYSize = 30 *cm; 
  MOPIFirstAluminumLayerYSize = defaultMOPIFirstAluminumLayerYSize;
  
  G4double defaultMOPIFirstAluminumLayerZSize = 30 *cm; 
  MOPIFirstAluminumLayerZSize = defaultMOPIFirstAluminumLayerZSize;
  
  G4double defaultMOPIFirstAluminumLayerXPosition = 
    MOPIFirstKaptonLayerXPosition + MOPIFirstKaptonLayerXSize/2 + MOPIFirstAluminumLayerXSize/2;
  MOPIFirstAluminumLayerXPosition = defaultMOPIFirstAluminumLayerXPosition;
  
  G4double defaultMOPIFirstAluminumLayerYPosition = 0.0 *mm;
  MOPIFirstAluminumLayerYPosition = defaultMOPIFirstAluminumLayerYPosition;
 
  G4double defaultMOPIFirstAluminumLayerZPosition = 0.0 *mm;
  MOPIFirstAluminumLayerZPosition = defaultMOPIFirstAluminumLayerZPosition;
 
  // First Air gap of MOPI
  G4double defaultMOPIFirstAirGapXSize = 6000 *um;
  MOPIFirstAirGapXSize = defaultMOPIFirstAirGapXSize;
 
  G4double defaultMOPIFirstAirGapYSize = 30 *cm;
  MOPIFirstAirGapYSize = defaultMOPIFirstAirGapYSize;
 
  G4double defaultMOPIFirstAirGapZSize = 30 *cm;
  MOPIFirstAirGapZSize = defaultMOPIFirstAirGapZSize;

  G4double defaultMOPIFirstAirGapXPosition = 
    MOPIFirstAluminumLayerXPosition + MOPIFirstAluminumLayerXSize/2 + MOPIFirstAirGapXSize/2;
  MOPIFirstAirGapXPosition = defaultMOPIFirstAirGapXPosition;
 
  G4double defaultMOPIFirstAirGapYPosition = 0.0 *mm;
  MOPIFirstAirGapYPosition = defaultMOPIFirstAirGapYPosition;

  G4double defaultMOPIFirstAirGapZPosition = 0.0 *mm;
  MOPIFirstAirGapZPosition = defaultMOPIFirstAirGapZPosition;

  // Cathode of MOPI
  G4double defaultMOPICathodeXSize = 25.0 *um;
  MOPICathodeXSize = defaultMOPICathodeXSize;

  G4double defaultMOPICathodeYSize = 30.0 *cm;
  MOPICathodeYSize = defaultMOPICathodeYSize;

  G4double defaultMOPICathodeZSize = 30.0 *cm;
  MOPICathodeZSize = defaultMOPICathodeZSize;
 
  G4double defaultMOPICathodeXPosition = 
    MOPIFirstAirGapXPosition + MOPIFirstAirGapXSize/2 + MOPICathodeXSize/2;
  MOPICathodeXPosition = defaultMOPICathodeXPosition;

  G4double defaultMOPICathodeYPosition = 0.0 *mm;
  MOPICathodeYPosition = defaultMOPICathodeYPosition;

  G4double defaultMOPICathodeZPosition = 0.0 *mm;
  MOPICathodeZPosition = defaultMOPICathodeZPosition;

  // Second Air gap of MOPI
  G4double defaultMOPISecondAirGapXSize = 6000 *um;
  MOPISecondAirGapXSize = defaultMOPISecondAirGapXSize;

  G4double defaultMOPISecondAirGapYSize = 30 *cm;
  MOPISecondAirGapYSize = defaultMOPISecondAirGapYSize;

  G4double defaultMOPISecondAirGapZSize = 30 *cm;
  MOPISecondAirGapZSize = defaultMOPISecondAirGapZSize;

  G4double defaultMOPISecondAirGapXPosition = 
    MOPICathodeXPosition + MOPICathodeXSize/2 + MOPISecondAirGapXSize/2;
  MOPISecondAirGapXPosition = defaultMOPISecondAirGapXPosition;

  G4double defaultMOPISecondAirGapYPosition = 0.0 *mm;
  MOPISecondAirGapYPosition = defaultMOPISecondAirGapYPosition;

  G4double defaultMOPISecondAirGapZPosition = 0.0 *mm;
  MOPISecondAirGapZPosition = defaultMOPISecondAirGapZPosition;

  //Second Aluminum  Layer of MOPI
  G4double defaultMOPISecondAluminumLayerXSize = 15 *um; 
  MOPISecondAluminumLayerXSize = defaultMOPISecondAluminumLayerXSize;
 
  G4double defaultMOPISecondAluminumLayerYSize = 30 *cm; 
  MOPISecondAluminumLayerYSize = defaultMOPISecondAluminumLayerYSize;
 
  G4double defaultMOPISecondAluminumLayerZSize = 30 *cm; 
  MOPISecondAluminumLayerZSize = defaultMOPISecondAluminumLayerZSize;
 
  G4double defaultMOPISecondAluminumLayerXPosition = 
    MOPISecondAirGapXPosition + MOPISecondAirGapXSize/2 + MOPISecondAluminumLayerXSize/2;
  MOPISecondAluminumLayerXPosition = defaultMOPISecondAluminumLayerXPosition;
 
  G4double defaultMOPISecondAluminumLayerYPosition = 0.0 *mm;
  MOPISecondAluminumLayerYPosition = defaultMOPISecondAluminumLayerYPosition;

  G4double defaultMOPISecondAluminumLayerZPosition = 0.0 *mm;
  MOPISecondAluminumLayerZPosition = defaultMOPISecondAluminumLayerZPosition;
 
  // Second Kapton Layer of MOPI
  G4double defaultMOPISecondKaptonLayerXSize = 35 *um; 
  MOPISecondKaptonLayerXSize = defaultMOPISecondKaptonLayerXSize;

  G4double defaultMOPISecondKaptonLayerYSize = 30 *cm; 
  MOPISecondKaptonLayerYSize = defaultMOPISecondKaptonLayerYSize;
 
  G4double defaultMOPISecondKaptonLayerZSize = 30 *cm; 
  MOPISecondKaptonLayerZSize = defaultMOPISecondKaptonLayerZSize;

  G4double defaultMOPISecondKaptonLayerXPosition = 
    MOPISecondAluminumLayerXPosition + MOPISecondAluminumLayerXSize/2 + MOPISecondKaptonLayerXSize/2;
  MOPISecondKaptonLayerXPosition = defaultMOPISecondKaptonLayerXPosition;

  G4double defaultMOPISecondKaptonLayerYPosition = 0.0 *mm;
  MOPISecondKaptonLayerYPosition = defaultMOPISecondKaptonLayerYPosition;
  
  G4double defaultMOPISecondKaptonLayerZPosition = 0.0 *mm;
  MOPISecondKaptonLayerZPosition = defaultMOPISecondKaptonLayerZPosition;


  // FINAL COLLIMATOR: is the collimator giving the final transversal shape
  // of the beam 
  G4double defaultinnerRadiusFinalCollimator = 7.5 *mm;
  innerRadiusFinalCollimator = defaultinnerRadiusFinalCollimator;
 
  // DEFAULT DEFINITION OF THE MATERIALS
  // All elements and compound definition follows the NIST database
 
  // ELEMENTS
  G4bool isotopes = false;
  G4Material* aluminumNist = G4NistManager::Instance()->FindOrBuildMaterial("G4_Al", isotopes);
  G4Material* tantalumNist = G4NistManager::Instance()->FindOrBuildMaterial("G4_Ta", isotopes); 
  G4Material* copperNistAsMaterial = G4NistManager::Instance()->FindOrBuildMaterial("G4_Cu", isotopes);
  G4Element* zincNist = G4NistManager::Instance()->FindOrBuildElement("Zn");
  G4Element* copperNist = G4NistManager::Instance()->FindOrBuildElement("Cu");

  // COMPOUND
  G4Material* airNist =  G4NistManager::Instance()->FindOrBuildMaterial("G4_AIR", isotopes);
  G4Material* kaptonNist = G4NistManager::Instance()->FindOrBuildMaterial("G4_KAPTON", isotopes);
  G4Material* galacticNist = G4NistManager::Instance()->FindOrBuildMaterial("G4_Galactic", isotopes);
  G4Material* PMMANist = G4NistManager::Instance()->FindOrBuildMaterial("G4_PLEXIGLASS", isotopes);
  G4Material* mylarNist = G4NistManager::Instance()->FindOrBuildMaterial("G4_MYLAR", isotopes);

  G4double d; // Density
  G4int nComponents;// Number of components 
  G4double fractionmass; // Fraction in mass of an element in a material

  d = 8.40*g/cm3;
  nComponents = 2;
  G4Material* brass = new G4Material("Brass", d, nComponents);  
  brass -> AddElement(zincNist, fractionmass = 30 *perCent);
  brass -> AddElement(copperNist, fractionmass = 70 *perCent);


//***************************** PW ***************************************

// DetectorROGeometry Material
  new G4Material("dummyMat", 1., 1.*g/mole, 1.*g/cm3);

//***************************** PW ***************************************

  
 
  // MATERIAL ASSIGNMENT
  // Range shifter
  rangeShifterMaterial = airNist;

  // Support of the beam line
  beamLineSupportMaterial = aluminumNist;

  // Vacuum pipe
  vacuumZoneMaterial = galacticNist;

  // Material of the fisrt scattering foil
  firstScatteringFoilMaterial = tantalumNist;
 
  // Material of kapton window 
  kaptonWindowMaterial = kaptonNist;
 
  // Material of the stopper
  stopperMaterial = brass;
 
  // Material of the second scattering foil 
  secondScatteringFoilMaterial = tantalumNist;
 
  // Materials of the collimators
  firstCollimatorMaterial = PMMANist;
  holeFirstCollimatorMaterial = airNist;
 
  // Box containing the modulator wheel
  modulatorBoxMaterial = aluminumNist;
  holeModulatorBoxMaterial = airNist;
 
  // Materials of the monitor chamber
  layer1MonitorChamberMaterial = kaptonNist;
  layer2MonitorChamberMaterial = copperNistAsMaterial;
  layer3MonitorChamberMaterial = airNist;
  layer4MonitorChamberMaterial = copperNistAsMaterial;
 
  // Mother volume of the MOPI detector
  MOPIMotherVolumeMaterial = airNist;
  MOPIFirstKaptonLayerMaterial = kaptonNist;
  MOPIFirstAluminumLayerMaterial = aluminumNist;
  MOPIFirstAirGapMaterial = airNist;
  MOPICathodeMaterial = mylarNist;
  MOPISecondAirGapMaterial = airNist;
  MOPISecondAluminumLayerMaterial = aluminumNist;
  MOPISecondKaptonLayerMaterial = kaptonNist;

  // material of the final nozzle
  nozzleSupportMaterial = PMMANist;
  brassTubeMaterial = brassTube2Material = brassTube3Material = brass;
  holeNozzleSupportMaterial = airNist;

  // Material of the final collimator
  finalCollimatorMaterial = brass;
}

void PassiveProtonBeamLine::ConstructPassiveProtonBeamLine()
{ 
  // -----------------------------
  // Treatment room - World volume
  //------------------------------
  // Treatment room sizes
  const G4double worldX = 400.0 *cm;
  const G4double worldY = 400.0 *cm;
  const G4double worldZ = 400.0 *cm;
  G4bool isotopes = false;
 
  G4Material* airNist =  G4NistManager::Instance()->FindOrBuildMaterial("G4_AIR", isotopes);
  G4Box* treatmentRoom = new G4Box("TreatmentRoom",worldX,worldY,worldZ);
  G4LogicalVolume* logicTreatmentRoom = new G4LogicalVolume(treatmentRoom, 
                                                            airNist, 
                                                            "logicTreatmentRoom", 
                                0,0,0);
  physicalTreatmentRoom = new G4PVPlacement(0,
                        G4ThreeVector(),
                        "physicalTreatmentRoom", 
                        logicTreatmentRoom, 
                        0,false,0);
 

  // The treatment room is invisible in the Visualisation
  logicTreatmentRoom -> SetVisAttributes (G4VisAttributes::Invisible);
 
  // Components of the Passive Proton Beam Line
  HadrontherapyBeamLineSupport();
  HadrontherapyBeamScatteringFoils();
  HadrontherapyRangeShifter();
  HadrontherapyBeamCollimators();
  HadrontherapyBeamMonitoring();
  HadrontherapyMOPIDetector();
  HadrontherapyBeamNozzle();
  HadrontherapyBeamFinalCollimator();

  // The following lines construc a typical modulator wheel inside the Passive Beam line.
  // Please remember to set the nodulator material (default is air, i.e. no modulator!) 
  // in the HadrontherapyModulator.cc file
  modulator = new HadrontherapyModulator();
  modulator -> BuildModulator(physicalTreatmentRoom);
}

void PassiveProtonBeamLine::HadrontherapyBeamLineSupport()
{
  // ------------------//
  // BEAM LINE SUPPORT //
  //-------------------//
  const G4double beamLineSupportXSize = 1.5*m;
  const G4double beamLineSupportYSize = 20.*mm;
  const G4double beamLineSupportZSize = 600.*mm;

  const G4double beamLineSupportXPosition = -1745.09 *mm;
  const G4double beamLineSupportYPosition = -230. *mm; 
  const G4double beamLineSupportZPosition = 0.*mm;

  G4Box* beamLineSupport = new G4Box("BeamLineSupport", 
                     beamLineSupportXSize, 
                     beamLineSupportYSize, 
                     beamLineSupportZSize);

  G4LogicalVolume* logicBeamLineSupport = new G4LogicalVolume(beamLineSupport, 
                                  beamLineSupportMaterial, 
                                  "BeamLineSupport");
  physiBeamLineSupport = new G4PVPlacement(0, G4ThreeVector(beamLineSupportXPosition, 
                                beamLineSupportYPosition,
                                beamLineSupportZPosition),
                       "BeamLineSupport", 
                       logicBeamLineSupport, 
                       physicalTreatmentRoom, false, 0);
 
  // Visualisation attributes of the beam line support

  logicBeamLineSupport -> SetVisAttributes(gray);

  //---------------------------------//
  //  Beam line cover 1 (left panel) //
  //---------------------------------//
  const G4double beamLineCoverXSize = 1.5*m;
  const G4double beamLineCoverYSize = 750.*mm;
  const G4double beamLineCoverZSize = 10.*mm; 

  const G4double beamLineCoverXPosition = -1745.09 *mm;
  const G4double beamLineCoverYPosition = -1000.*mm; 
  const G4double beamLineCoverZPosition = 600.*mm;

  G4Box* beamLineCover = new G4Box("BeamLineCover",
                   beamLineCoverXSize, 
                   beamLineCoverYSize, 
                   beamLineCoverZSize);

  G4LogicalVolume* logicBeamLineCover = new G4LogicalVolume(beamLineCover,
                                beamLineSupportMaterial, 
                                "BeamLineCover");

  physiBeamLineCover = new G4PVPlacement(0, G4ThreeVector(beamLineCoverXPosition,
                              beamLineCoverYPosition,
                              beamLineCoverZPosition),
                     "BeamLineCover", 
                     logicBeamLineCover, 
                     physicalTreatmentRoom,
                     false, 
                     0);

  // ---------------------------------//
  //  Beam line cover 2 (rigth panel) //
  // ---------------------------------//
  // It has the same characteristic of beam line cover 1 but set in a different position
  physiBeamLineCover2 = new G4PVPlacement(0, G4ThreeVector(beamLineCoverXPosition,
                               beamLineCoverYPosition,
                               - beamLineCoverZPosition),
                      "BeamLineCover2", 
                      logicBeamLineCover, 
                      physicalTreatmentRoom, 
                      false, 
                      0);

  logicBeamLineCover -> SetVisAttributes(blue);
}

void PassiveProtonBeamLine::HadrontherapyBeamScatteringFoils()
{
  // ------------//
  // VACUUM PIPE //
  //-------------//
  //
  // First track of the beam line is inside vacuum;
  // The PIPE contains the FIRST SCATTERING FOIL and the KAPTON WINDOW
  G4Box* vacuumZone = new G4Box("VacuumZone", vacuumZoneXSize, vacuumZoneYSize, vacuumZoneZSize);
  G4LogicalVolume* logicVacuumZone = new G4LogicalVolume(vacuumZone, vacuumZoneMaterial, "VacuumZone");
  G4VPhysicalVolume* physiVacuumZone = new G4PVPlacement(0, G4ThreeVector(vacuumZoneXPosition, 0., 0.),
                             "VacuumZone", logicVacuumZone, physicalTreatmentRoom, false, 0);
  // --------------------------//
  // THE FIRST SCATTERING FOIL //
  // --------------------------//
  // A thin foil performing a first scattering
  // of the original beam
  firstScatteringFoil = new G4Box("FirstScatteringFoil", 
                  firstScatteringFoilXSize, 
                  firstScatteringFoilYSize, 
                  firstScatteringFoilZSize);

  G4LogicalVolume* logicFirstScatteringFoil = new G4LogicalVolume(firstScatteringFoil,
                                  firstScatteringFoilMaterial,
                                  "FirstScatteringFoil");
  
  physiFirstScatteringFoil = new G4PVPlacement(0, G4ThreeVector(firstScatteringFoilXPosition, 0.,0.),
                           "FirstScatteringFoil", logicFirstScatteringFoil, physiVacuumZone, 
                           false, 0); 
  
  logicFirstScatteringFoil -> SetVisAttributes(skyBlue);
  // -------------------//
  // THE KAPTON WINDOWS //
  //--------------------//
  //It prmits the passage of the beam from vacuum to air
  G4Box* solidKaptonWindow = new G4Box("KaptonWindow", 
                       kaptonWindowXSize,
                       kaptonWindowYSize,
                       kaptonWindowZSize);

  G4LogicalVolume* logicKaptonWindow = new G4LogicalVolume(solidKaptonWindow, 
                               kaptonWindowMaterial,
                               "KaptonWindow");

  physiKaptonWindow = new G4PVPlacement(0, G4ThreeVector(kaptonWindowXPosition, 0., 0.), 
                    "KaptonWindow", logicKaptonWindow,
                    physiVacuumZone, false, 0); 

  logicKaptonWindow -> SetVisAttributes(darkOrange3);

  // ------------//
  // THE STOPPER //
  //-------------//
  // Is a small cylinder able to stop the central component
  // of the beam (having a gaussian shape). It is connected to the SECON SCATTERING FOIL
  // and represent the second element of the scattering system
  G4double phi = 90. *deg;
  // Matrix definition for a 90 deg rotation with respect to Y axis
  G4RotationMatrix rm;
  rm.rotateY(phi);
  
  solidStopper = new G4Tubs("Stopper", 
                innerRadiusStopper, 
                outerRadiusStopper,
                heightStopper, 
                startAngleStopper,
                spanningAngleStopper);
  
  logicStopper = new G4LogicalVolume(solidStopper, 
                     stopperMaterial, 
                     "Stopper", 
                     0, 0, 0);
  
  physiStopper = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector(stopperXPosition, 
                                   stopperYPosition, 
                                   stopperZPosition)),
                   "Stopper", 
                   logicStopper, 
                   physicalTreatmentRoom, 
                   false, 
                   0);
 
  logicStopper -> SetVisAttributes(red);

  // ---------------------------//
  // THE SECOND SCATTERING FOIL //
  // ---------------------------//
  // It is another thin foil and provides the
  // final diffusion of the beam. It represents the third element of the scattering
  // system;

  secondScatteringFoil = new G4Box("SecondScatteringFoil", 
                   secondScatteringFoilXSize, 
                   secondScatteringFoilYSize,
                   secondScatteringFoilZSize);
  
  G4LogicalVolume* logicSecondScatteringFoil = new G4LogicalVolume(secondScatteringFoil, 
                                   secondScatteringFoilMaterial,
                                   "SecondScatteringFoil");
  
  physiSecondScatteringFoil = new G4PVPlacement(0, G4ThreeVector(secondScatteringFoilXPosition,
                                 secondScatteringFoilYPosition,
                                 secondScatteringFoilZPosition),
                        "SeconScatteringFoil", 
                        logicSecondScatteringFoil, 
                        physicalTreatmentRoom, 
                        false, 
                        0);
  
  logicSecondScatteringFoil -> SetVisAttributes(skyBlue);
}
void PassiveProtonBeamLine::HadrontherapyRangeShifter()
{
  // ---------------------------- //
  //         THE RANGE SHIFTER    //
  // -----------------------------//
  // It is a slab of PMMA acting as energy degreader of 
  // primary beam
  solidRangeShifterBox = new G4Box("RangeShifterBox",
                   rangeShifterXSize,
                   rangeShifterYSize,
                   rangeShifterZSize);
  
  logicRangeShifterBox = new G4LogicalVolume(solidRangeShifterBox,
                                             rangeShifterMaterial,
                         "RangeShifterBox");
  physiRangeShifterBox = new G4PVPlacement(0,
                       G4ThreeVector(rangeShifterXPosition, 0., 0.),
                       "RangeShifterBox",
                       logicRangeShifterBox,
                       physicalTreatmentRoom, 
                       false,
                       0);                        

 
  logicRangeShifterBox -> SetVisAttributes(yellow);
}
void PassiveProtonBeamLine::HadrontherapyBeamCollimators()
{
  // -----------------//
  // FIRST COLLIMATOR //
  // -----------------//
  // It is a slab of PMMA with an hole in its center
  const G4double firstCollimatorXSize = 20.*mm;
  const G4double firstCollimatorYSize = 100.*mm;
  const G4double firstCollimatorZSize = 100.*mm;

  const G4double firstCollimatorXPosition = -2673.00*mm;
  const G4double firstCollimatorYPosition = 0.*mm;
  const G4double firstCollimatorZPosition = 0.*mm;

  G4Box* solidFirstCollimator = new G4Box("FirstCollimator", 
                      firstCollimatorXSize, 
                      firstCollimatorYSize, 
                      firstCollimatorZSize);

  G4LogicalVolume* logicFirstCollimator = new G4LogicalVolume(solidFirstCollimator, 
                                  firstCollimatorMaterial, 
                                  "FirstCollimator");

  physiFirstCollimator = new G4PVPlacement(0, G4ThreeVector(firstCollimatorXPosition,
                                firstCollimatorYPosition,
                                firstCollimatorZPosition),
                       "FirstCollimator", 
                       logicFirstCollimator, 
                       physicalTreatmentRoom, 
                       false, 
                       0);
  // ----------------------------//
  // Hole of the first collimator//
  //-----------------------------//
  G4double innerRadiusHoleFirstCollimator   = 0.*mm;
  G4double outerRadiusHoleFirstCollimator   = 15.*mm;
  G4double hightHoleFirstCollimator         = 20.*mm;
  G4double startAngleHoleFirstCollimator    = 0.*deg;
  G4double spanningAngleHoleFirstCollimator = 360.*deg;

  G4Tubs* solidHoleFirstCollimator = new G4Tubs("HoleFirstCollimator", 
                        innerRadiusHoleFirstCollimator, 
                        outerRadiusHoleFirstCollimator,
                        hightHoleFirstCollimator, 
                        startAngleHoleFirstCollimator, 
                        spanningAngleHoleFirstCollimator);

  G4LogicalVolume* logicHoleFirstCollimator = new G4LogicalVolume(solidHoleFirstCollimator, 
                                  holeFirstCollimatorMaterial, 
                                  "HoleFirstCollimator", 
                                  0, 0, 0);
  G4double phi = 90. *deg;     
  // Matrix definition for a 90 deg rotation. Also used for other volumes       
  G4RotationMatrix rm;     
  rm.rotateY(phi);

  physiHoleFirstCollimator = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector()), 
                           "HoleFirstCollimator",
                           logicHoleFirstCollimator, 
                           physiFirstCollimator, 
                           false, 
                           0);   
  // ------------------// 
  // SECOND COLLIMATOR //
  //-------------------//
  // It is a slab of PMMA with an hole in its center
  const G4double secondCollimatorXPosition = -1900.00*mm;
  const G4double secondCollimatorYPosition =  0*mm;
  const G4double secondCollimatorZPosition =  0*mm;

  physiSecondCollimator = new G4PVPlacement(0, G4ThreeVector(secondCollimatorXPosition,
                                 secondCollimatorYPosition,
                                 secondCollimatorZPosition),
                        "SecondCollimator", 
                        logicFirstCollimator, 
                        physicalTreatmentRoom, 
                        false, 
                        0);

  // ------------------------------//
  // Hole of the second collimator //
  // ------------------------------//
  physiHoleSecondCollimator = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector()), 
                        "HoleSecondCollimator",
                        logicHoleFirstCollimator, 
                        physiSecondCollimator, 
                        false, 
                        0); 

  // --------------------------------------//
  // FIRST SIDE OF THE MODULATOR BOX      //
  // --------------------------------------//
  // The modulator box is an aluminum box in which
  // the range shifter and the energy modulator are located
  // In this example only the entrance and exit
  // faces of the box are simulated. 
  // Each face is an aluminum slab with an hole in its center 

  const G4double firstCollimatorModulatorXSize = 10.*mm;
  const G4double firstCollimatorModulatorYSize = 200.*mm;
  const G4double firstCollimatorModulatorZSize = 200.*mm;
   
  const G4double firstCollimatorModulatorXPosition = -2523.00*mm;
  const G4double firstCollimatorModulatorYPosition = 0.*mm;
  const G4double firstCollimatorModulatorZPosition = 0.*mm;

  G4Box* solidFirstCollimatorModulatorBox = new G4Box("FirstCollimatorModulatorBox", 
                              firstCollimatorModulatorXSize,
                              firstCollimatorModulatorYSize, 
                              firstCollimatorModulatorZSize);

  G4LogicalVolume* logicFirstCollimatorModulatorBox = new G4LogicalVolume(solidFirstCollimatorModulatorBox, 
                                      modulatorBoxMaterial,
                                      "FirstCollimatorModulatorBox");

  physiFirstCollimatorModulatorBox = new G4PVPlacement(0, G4ThreeVector(firstCollimatorModulatorXPosition,
                                    firstCollimatorModulatorYPosition,
                                    firstCollimatorModulatorZPosition),
                               "FirstCollimatorModulatorBox",
                               logicFirstCollimatorModulatorBox,
                               physicalTreatmentRoom, false, 0);

  // ----------------------------------------------------//
  //   Hole of the first collimator of the modulator box //
  // ----------------------------------------------------//
  const G4double innerRadiusHoleFirstCollimatorModulatorBox = 0.*mm;
  const G4double outerRadiusHoleFirstCollimatorModulatorBox = 31.*mm;
  const G4double hightHoleFirstCollimatorModulatorBox = 10.*mm;
  const G4double startAngleHoleFirstCollimatorModulatorBox = 0.*deg;
  const G4double spanningAngleHoleFirstCollimatorModulatorBox = 360.*deg;

  G4Tubs* solidHoleFirstCollimatorModulatorBox  = new G4Tubs("HoleFirstCollimatorModulatorBox",
                                 innerRadiusHoleFirstCollimatorModulatorBox,
                                 outerRadiusHoleFirstCollimatorModulatorBox,
                                 hightHoleFirstCollimatorModulatorBox ,
                                 startAngleHoleFirstCollimatorModulatorBox,
                                 spanningAngleHoleFirstCollimatorModulatorBox);

  G4LogicalVolume* logicHoleFirstCollimatorModulatorBox = new G4LogicalVolume(solidHoleFirstCollimatorModulatorBox,
                                          holeModulatorBoxMaterial, 
                                          "HoleFirstCollimatorModulatorBox", 
                                          0, 0, 0);
  
  physiHoleFirstCollimatorModulatorBox = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector()),
                               "HoleFirstCollimatorModulatorBox",
                               logicHoleFirstCollimatorModulatorBox,
                               physiFirstCollimatorModulatorBox, false, 0); 
  
  // --------------------------------------------------//
  //       SECOND SIDE OF THE MODULATOR BOX            //
  // --------------------------------------------------//
  const G4double secondCollimatorModulatorXSize = 10.*mm;
  const G4double secondCollimatorModulatorYSize = 200.*mm;
  const G4double secondCollimatorModulatorZSize = 200.*mm;
  
  const G4double secondCollimatorModulatorXPosition = -1953.00 *mm;
  
  const G4double secondCollimatorModulatorYPosition = 0.*mm;
  const G4double secondCollimatorModulatorZPosition = 0.*mm;
 
  G4Box* solidSecondCollimatorModulatorBox = new G4Box("SecondCollimatorModulatorBox", 
                               secondCollimatorModulatorXSize,
                               secondCollimatorModulatorYSize, 
                               secondCollimatorModulatorZSize);
  
  G4LogicalVolume* logicSecondCollimatorModulatorBox = new G4LogicalVolume(solidSecondCollimatorModulatorBox, 
                                       modulatorBoxMaterial,
                                       "SecondCollimatorModulatorBox");
  
  physiSecondCollimatorModulatorBox = new G4PVPlacement(0, G4ThreeVector(secondCollimatorModulatorXPosition,
                                     secondCollimatorModulatorYPosition,
                                     secondCollimatorModulatorZPosition),
                            "SecondCollimatorModulatorBox",
                            logicSecondCollimatorModulatorBox,
                            physicalTreatmentRoom, false, 0);

  // ----------------------------------------------// 
  //   Hole of the second collimator modulator box //
  // ----------------------------------------------//
  const G4double innerRadiusHoleSecondCollimatorModulatorBox = 0.*mm;
  const G4double outerRadiusHoleSecondCollimatorModulatorBox = 31.*mm;
  const G4double hightHoleSecondCollimatorModulatorBox = 10.*mm;
  const G4double startAngleHoleSecondCollimatorModulatorBox = 0.*deg;
  const G4double spanningAngleHoleSecondCollimatorModulatorBox = 360.*deg;

  G4Tubs* solidHoleSecondCollimatorModulatorBox  = new G4Tubs("HoleSecondCollimatorModulatorBox",
                                  innerRadiusHoleSecondCollimatorModulatorBox,
                                  outerRadiusHoleSecondCollimatorModulatorBox,
                                  hightHoleSecondCollimatorModulatorBox ,
                                  startAngleHoleSecondCollimatorModulatorBox,
                                  spanningAngleHoleSecondCollimatorModulatorBox);

  G4LogicalVolume* logicHoleSecondCollimatorModulatorBox = new G4LogicalVolume(solidHoleSecondCollimatorModulatorBox,
                                           holeModulatorBoxMaterial,
                                           "HoleSecondCollimatorModulatorBox", 
                                           0, 0, 0);

  physiHoleSecondCollimatorModulatorBox = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector()),
                                "HoleSecondCollimatorModulatorBox",
                                logicHoleSecondCollimatorModulatorBox,
                                physiSecondCollimatorModulatorBox, false, 0); 
  
  logicFirstCollimator -> SetVisAttributes(yellow);
  logicFirstCollimatorModulatorBox -> SetVisAttributes(blue);
  logicSecondCollimatorModulatorBox -> SetVisAttributes(blue);
}

void PassiveProtonBeamLine::HadrontherapyBeamMonitoring()
{
  // ----------------------------
  //   THE FIRST MONITOR CHAMBER
  // ----------------------------  
  // A monitor chamber is a free-air  ionisation chamber
  // able to measure do proton fluence during the treatment.
  // Here its responce is not simulated in terms of produced 
  // charge but only the energy losses are taked into account.
  // Each chamber consist of 9 mm of air in a box
  // that has two layers one of kapton and one
  // of copper
  const G4double monitor1XSize = 4.525022*mm;
  const G4double monitor2XSize = 0.000011*mm;
  const G4double monitor3XSize = 4.5*mm;
  const G4double monitorYSize = 10.*cm; 
  const G4double monitorZSize = 10.*cm;
  const G4double monitor1XPosition = -1262.47498 *mm;
  const G4double monitor2XPosition = -4.500011*mm;
  const G4double monitor4XPosition = 4.500011*mm;

  G4Box* solidFirstMonitorLayer1 = new G4Box("FirstMonitorLayer1", 
                         monitor1XSize, 
                         monitorYSize, 
                         monitorZSize);

  G4LogicalVolume* logicFirstMonitorLayer1 = new G4LogicalVolume(solidFirstMonitorLayer1, 
                                 layer1MonitorChamberMaterial,
                                 "FirstMonitorLayer1");

  physiFirstMonitorLayer1 = new G4PVPlacement(0,
                          G4ThreeVector(monitor1XPosition,0.*cm,0.*cm),
                          "FirstMonitorLayer1", 
                          logicFirstMonitorLayer1, 
                          physicalTreatmentRoom, 
                          false, 
                          0);

  G4Box* solidFirstMonitorLayer2 = new G4Box("FirstMonitorLayer2", 
                         monitor2XSize, 
                         monitorYSize, 
                         monitorZSize);
 
  G4LogicalVolume* logicFirstMonitorLayer2 = new G4LogicalVolume(solidFirstMonitorLayer2,
                                 layer2MonitorChamberMaterial,
                                 "FirstMonitorLayer2");
 
  physiFirstMonitorLayer2 = new G4PVPlacement(0, G4ThreeVector(monitor2XPosition,0.*cm,0.*cm),
                          "FirstMonitorLayer2", 
                          logicFirstMonitorLayer2, 
                          physiFirstMonitorLayer1,
                          false, 
                          0);
  
  G4Box* solidFirstMonitorLayer3 = new G4Box("FirstMonitorLayer3", 
                         monitor3XSize, 
                         monitorYSize, 
                         monitorZSize);

  G4LogicalVolume* logicFirstMonitorLayer3 = new G4LogicalVolume(solidFirstMonitorLayer3, 
                                 layer3MonitorChamberMaterial, 
                                 "FirstMonitorLayer3");

  physiFirstMonitorLayer3 = new G4PVPlacement(0, 
                          G4ThreeVector(0.*mm,0.*cm,0.*cm), 
                          "MonitorLayer3",
                          logicFirstMonitorLayer3, 
                          physiFirstMonitorLayer1, 
                          false, 
                          0);
    
  G4Box* solidFirstMonitorLayer4 = new G4Box("FirstMonitorLayer4", 
                         monitor2XSize, 
                         monitorYSize, 
                         monitorZSize);

  G4LogicalVolume* logicFirstMonitorLayer4 = new G4LogicalVolume(solidFirstMonitorLayer4, 
                                 layer4MonitorChamberMaterial, 
                                 "FirstMonitorLayer4");

  physiFirstMonitorLayer4 = new G4PVPlacement(0, G4ThreeVector(monitor4XPosition,0.*cm,0.*cm), 
                          "FirstMonitorLayer4",
                          logicFirstMonitorLayer4,
                          physiFirstMonitorLayer1, false, 0);
  // ----------------------------//
  // THE SECOND MONITOR CHAMBER  //
  // ----------------------------//
  physiSecondMonitorLayer1 = new G4PVPlacement(0, G4ThreeVector(-1131.42493 *mm,0.*cm,0.*cm),
                           "SecondMonitorLayer1", logicFirstMonitorLayer1,physicalTreatmentRoom, false, 0);

  physiSecondMonitorLayer2 = new G4PVPlacement(0, G4ThreeVector( monitor2XPosition,0.*cm,0.*cm), "SecondMonitorLayer2",
                           logicFirstMonitorLayer2, physiSecondMonitorLayer1, false, 0);
  
  physiSecondMonitorLayer3 = new G4PVPlacement(0, G4ThreeVector(0.*mm,0.*cm,0.*cm), "MonitorLayer3",
                           logicFirstMonitorLayer3, physiSecondMonitorLayer1, false, 0);
   
  physiSecondMonitorLayer4 = new G4PVPlacement(0, G4ThreeVector(monitor4XPosition,0.*cm,0.*cm), "SecondMonitorLayer4",
                           logicFirstMonitorLayer4, physiSecondMonitorLayer1, false, 0);
  
  logicFirstMonitorLayer3 -> SetVisAttributes(white);
 
}
void PassiveProtonBeamLine::HadrontherapyMOPIDetector()
{
  // --------------------------------//
  //        THE MOPI DETECTOR        //
  // --------------------------------//
  // MOPI DETECTOR: two orthogonal microstrip gas detectors developed 
  // by the INFN Section of Turin in collaboration with some 
  // of the author of this example. It permits the 
  // on-line check of the beam simmetry via the signal 
  // integration of the collected charge for each strip.
  //
  // In this example it is simulated as:
  // 1. First anode: 35 mu of kapton + 15 mu of aluminum,
  // 2. First air gap: 6 mm of air,
  // 3. The cathode: 1 mu Al + 25 mu mylar + 1 mu Al
  //    (in common with the two air gap),
  // 4. Second air gap: 6 mm of air,
  // 5  Second anode: 15 mu Al + 35 mu kapton
  // Color used in the graphical output


  // Mother volume
  solidMOPIMotherVolume = new G4Box("MOPIMotherVolume",
                    MOPIMotherVolumeXSize/2, 
                    MOPIMotherVolumeYSize/2, 
                    MOPIMotherVolumeYSize/2);
  
  logicMOPIMotherVolume = new G4LogicalVolume(solidMOPIMotherVolume, 
                          MOPIMotherVolumeMaterial, 
                          "MOPIMotherVolume");
  physiMOPIMotherVolume = new G4PVPlacement(0,
                        G4ThreeVector(MOPIMotherVolumeXPosition,
                              MOPIMotherVolumeYPosition,
                              MOPIMotherVolumeZPosition),
                        "MOPIMotherVolume",
                        logicMOPIMotherVolume,
                        physicalTreatmentRoom,
                        false,
                        0);

  // First Kapton layer
  solidMOPIFirstKaptonLayer = new G4Box("MOPIFirstKaptonLayer",
                    MOPIFirstKaptonLayerXSize/2, 
                    MOPIFirstKaptonLayerYSize/2 ,
                    MOPIFirstKaptonLayerZSize/2);
  
  logicMOPIFirstKaptonLayer = new G4LogicalVolume(solidMOPIFirstKaptonLayer, 
                          MOPIFirstKaptonLayerMaterial, 
                          "MOPIFirstKaptonLayer");
  
  physiMOPIFirstKaptonLayer = new G4PVPlacement(0,
                        G4ThreeVector(MOPIFirstKaptonLayerXPosition,
                                  MOPIFirstKaptonLayerYPosition ,
                                  MOPIFirstKaptonLayerZPosition),
                        "MOPIFirstKaptonLayer",
                        logicMOPIFirstKaptonLayer,
                        physiMOPIMotherVolume,
                        false,
                        0); 
  
  // First Aluminum layer
  solidMOPIFirstAluminumLayer = new G4Box("MOPIFirstAluminumLayer",
                      MOPIFirstAluminumLayerXSize/2, 
                      MOPIFirstAluminumLayerYSize/2 ,
                      MOPIFirstAluminumLayerZSize/2);
  
  logicMOPIFirstAluminumLayer = new G4LogicalVolume(solidMOPIFirstAluminumLayer,
                            MOPIFirstAluminumLayerMaterial,
                            "MOPIFirstAluminumLayer");
  
  physiMOPIFirstAluminumLayer = new G4PVPlacement(0,
                          G4ThreeVector(MOPIFirstAluminumLayerXPosition,
                                MOPIFirstAluminumLayerYPosition ,
                                MOPIFirstAluminumLayerZPosition),
                          "MOPIFirstAluminumLayer",
                          logicMOPIFirstAluminumLayer, physiMOPIMotherVolume, false, 0); 
 
  // First Air GAP
  solidMOPIFirstAirGap = new G4Box("MOPIFirstAirGap",
                   MOPIFirstAirGapXSize/2, 
                   MOPIFirstAirGapYSize/2,
                   MOPIFirstAirGapZSize/2);
  
  logicMOPIFirstAirGap = new G4LogicalVolume(solidMOPIFirstAirGap,
                         MOPIFirstAirGapMaterial,
                         "MOPIFirstAirgap");
  
  physiMOPIFirstAirGap = new G4PVPlacement(0,
                       G4ThreeVector(MOPIFirstAirGapXPosition,
                             MOPIFirstAirGapYPosition ,
                             MOPIFirstAirGapZPosition),
                       "MOPIFirstAirGap",
                       logicMOPIFirstAirGap, physiMOPIMotherVolume, false, 0); 
  
  
  // The Cathode 
  solidMOPICathode = new G4Box("MOPICathode",
                   MOPICathodeXSize/2, 
                   MOPICathodeYSize/2,
                   MOPICathodeZSize/2);
  
  logicMOPICathode = new G4LogicalVolume(solidMOPICathode, 
                     MOPICathodeMaterial, 
                     "MOPICathode");
  
  physiMOPICathode = new G4PVPlacement(0,
                       G4ThreeVector(MOPICathodeXPosition,
                             MOPICathodeYPosition ,
                             MOPICathodeZPosition),
                       "MOPICathode",
                       logicMOPICathode, 
                       physiMOPIMotherVolume, false, 0); 
  
  // Second Air GAP
  solidMOPISecondAirGap = new G4Box("MOPISecondAirGap",
                    MOPISecondAirGapXSize/2, 
                    MOPISecondAirGapYSize/2,
                    MOPISecondAirGapZSize/2);
  
  logicMOPISecondAirGap = new G4LogicalVolume(solidMOPISecondAirGap, 
                          MOPISecondAirGapMaterial,
                          "MOPISecondAirgap");
  
  physiMOPISecondAirGap = new G4PVPlacement(0,
                        G4ThreeVector(MOPISecondAirGapXPosition,
                              MOPISecondAirGapYPosition ,
                              MOPISecondAirGapZPosition),
                        "MOPISecondAirGap",
                        logicMOPISecondAirGap, physiMOPIMotherVolume, false, 0); 
  
  // Second Aluminum layer
  solidMOPISecondAluminumLayer = new G4Box("MOPISecondAluminumLayer",
                       MOPISecondAluminumLayerXSize/2, 
                       MOPISecondAluminumLayerYSize/2 ,
                       MOPISecondAluminumLayerZSize/2);
  
  logicMOPISecondAluminumLayer = new G4LogicalVolume(solidMOPISecondAluminumLayer, 
                             MOPISecondAluminumLayerMaterial,
                             "MOPISecondAluminumLayer");
  
  physiMOPISecondAluminumLayer = new G4PVPlacement(0,
                           G4ThreeVector(MOPISecondAluminumLayerXPosition,
                                 MOPISecondAluminumLayerYPosition ,
                                 MOPISecondAluminumLayerZPosition),
                           "MOPISecondAluminumLayer",
                           logicMOPISecondAluminumLayer, 
                           physiMOPIMotherVolume, 
                           false, 
                           0); 
  
  // Second Kapton layer
  solidMOPISecondKaptonLayer = new G4Box("MOPISecondKaptonLayer",
                     MOPISecondKaptonLayerXSize/2, 
                     MOPISecondKaptonLayerYSize/2 ,
                     MOPISecondKaptonLayerZSize/2);
  
  logicMOPISecondKaptonLayer = new G4LogicalVolume(solidMOPISecondKaptonLayer, 
                           MOPIFirstKaptonLayerMaterial,
                           "MOPISecondKaptonLayer");
  
  physiMOPISecondKaptonLayer = new G4PVPlacement(0,
                         G4ThreeVector(MOPISecondKaptonLayerXPosition,
                                   MOPISecondKaptonLayerYPosition ,
                                   MOPISecondKaptonLayerZPosition),
                         "MOPISecondKaptonLayer",
                         logicMOPISecondKaptonLayer, 
                         physiMOPIMotherVolume,
                         false,
                         0); 
  
  logicMOPIFirstAirGap -> SetVisAttributes(darkGreen);
  logicMOPISecondAirGap -> SetVisAttributes(darkGreen);
  
}
void PassiveProtonBeamLine::HadrontherapyBeamNozzle()
{
  // ------------------------------//
  // THE FINAL TUBE AND COLLIMATOR //
  //-------------------------------//
  // The last part of the transport beam line consists of
  // a 59 mm thick PMMA slab (to stop all the diffused radiation), a 370 mm brass tube
  // (to well collimate the proton beam) and a final collimator with 25 mm diameter
  // aperture (that provide the final trasversal shape of the beam)

  // -------------------//
  //     PMMA SUPPORT   //
  // -------------------//
  const G4double nozzleSupportXSize = 29.5 *mm;
  const G4double nozzleSupportYSize = 180. *mm;
  const G4double nozzleSupportZSize = 180. *mm;

  const G4double nozzleSupportXPosition = -397.50 *mm;

  G4double phi = 90. *deg;     
  // Matrix definition for a 90 deg rotation. Also used for other volumes       
  G4RotationMatrix rm;               
  rm.rotateY(phi);

  G4Box* solidNozzleSupport = new G4Box("NozzleSupport", 
                    nozzleSupportXSize, 
                    nozzleSupportYSize, 
                    nozzleSupportZSize);

  G4LogicalVolume* logicNozzleSupport = new G4LogicalVolume(solidNozzleSupport, 
                                nozzleSupportMaterial, 
                                "NozzleSupport");
 
  physiNozzleSupport = new G4PVPlacement(0, G4ThreeVector(nozzleSupportXPosition,0., 0.),
                     "NozzleSupport", 
                     logicNozzleSupport, 
                     physicalTreatmentRoom, 
                     false, 
                     0);

  logicNozzleSupport -> SetVisAttributes(yellow);


 
  //------------------------------------//
  // HOLE IN THE SUPPORT                //
  //------------------------------------//
  const G4double innerRadiusHoleNozzleSupport = 0.*mm;
  const G4double outerRadiusHoleNozzleSupport = 21.5*mm;
  const G4double hightHoleNozzleSupport = 29.5 *mm;
  const G4double startAngleHoleNozzleSupport = 0.*deg;
  const G4double spanningAngleHoleNozzleSupport = 360.*deg;

  G4Tubs* solidHoleNozzleSupport = new G4Tubs("HoleNozzleSupport",
                            innerRadiusHoleNozzleSupport,
                            outerRadiusHoleNozzleSupport, 
                            hightHoleNozzleSupport,
                            startAngleHoleNozzleSupport, 
                            spanningAngleHoleNozzleSupport);

  G4LogicalVolume* logicHoleNozzleSupport = new G4LogicalVolume(solidHoleNozzleSupport, 
                                holeNozzleSupportMaterial,
                                "HoleNozzleSupport",
                                0, 
                                0,
                                0);

  
  physiHoleNozzleSupport = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector()), 
                           "HoleNozzleSupport",
                           logicHoleNozzleSupport, 
                           physiNozzleSupport, 
                           false, 0);
  
  logicHoleNozzleSupport -> SetVisAttributes(darkOrange3); 

  // ---------------------------------//
  //     BRASS TUBE 1 (phantom side)    //
  // ---------------------------------//
  const G4double innerRadiusBrassTube= 18.*mm;
  const G4double outerRadiusBrassTube = 21.5 *mm;
  const G4double hightBrassTube = 140.5*mm;
  const G4double startAngleBrassTube = 0.*deg;
  const G4double spanningAngleBrassTube = 360.*deg;

  const G4double brassTubeXPosition = -227.5 *mm;
 
  G4Tubs* solidBrassTube = new G4Tubs("BrassTube", 
                      innerRadiusBrassTube, 
                      outerRadiusBrassTube,
                      hightBrassTube, 
                      startAngleBrassTube, 
                      spanningAngleBrassTube);

  G4LogicalVolume* logicBrassTube = new G4LogicalVolume(solidBrassTube, 
                            brassTubeMaterial, 
                            "BrassTube", 
                            0, 0, 0);

  physiBrassTube = new G4PVPlacement(G4Transform3D(rm, 
                           G4ThreeVector(brassTubeXPosition,
                                 0., 
                                 0.)),
                     "BrassTube", 
                     logicBrassTube, 
                     physicalTreatmentRoom,
                     false, 
                     0); 

  logicBrassTube -> SetVisAttributes(darkOrange3);
 
  // ----------------------------------------------//
  //     BRASS TUBE 2 (inside the PMMA support)    //
  // ----------------------------------------------//
  const G4double innerRadiusBrassTube2= 18.*mm;
  const G4double outerRadiusBrassTube2 = 21.5 *mm;
  const G4double hightBrassTube2 = 29.5*mm;
  const G4double startAngleBrassTube2 = 0.*deg;
  const G4double spanningAngleBrassTube2 = 360.*deg;

  //  const G4double brassTube2XPosition = -227.5 *mm;
 
  G4Tubs* solidBrassTube2 = new G4Tubs("BrassTube2", 
                      innerRadiusBrassTube2, 
                      outerRadiusBrassTube2,
                      hightBrassTube2, 
                      startAngleBrassTube2, 
                      spanningAngleBrassTube2);

  G4LogicalVolume* logicBrassTube2 = new G4LogicalVolume(solidBrassTube2, 
                            brassTube2Material, 
                            "BrassTube2", 
                            0, 0, 0);

  physiBrassTube2 = new G4PVPlacement(G4Transform3D(rm, 
                           G4ThreeVector(0,
                                 0., 
                                 0.)),
                     "BrassTube2", 
                     logicBrassTube2, 
                     physiNozzleSupport,
                     false, 
                     0); 

  logicBrassTube2 -> SetVisAttributes(darkOrange3);


 // --------------------------------------//
  //     BRASS TUBE 3 (beam line side)    //
  // -------------------------------------//
  const G4double innerRadiusBrassTube3= 18.*mm;
  const G4double outerRadiusBrassTube3 = 21.5 *mm;
  const G4double hightBrassTube3 = 10.0 *mm;
  const G4double startAngleBrassTube3 = 0.*deg;
  const G4double spanningAngleBrassTube3 = 360.*deg;

  const G4double brassTube3XPosition = -437 *mm;
 
  G4Tubs* solidBrassTube3 = new G4Tubs("BrassTube3", 
                      innerRadiusBrassTube3, 
                      outerRadiusBrassTube3,
                      hightBrassTube3, 
                      startAngleBrassTube3, 
                      spanningAngleBrassTube3);

  G4LogicalVolume* logicBrassTube3 = new G4LogicalVolume(solidBrassTube3, 
                            brassTube3Material, 
                            "BrassTube3", 
                            0, 0, 0);

  physiBrassTube3 = new G4PVPlacement(G4Transform3D(rm, 
                           G4ThreeVector(brassTube3XPosition,
                                 0., 
                                 0.)),
                     "BrassTube3", 
                     logicBrassTube3, 
                     physicalTreatmentRoom,
                     false, 
                     0); 

  logicBrassTube3 -> SetVisAttributes(darkOrange3);
}

void PassiveProtonBeamLine::HadrontherapyBeamFinalCollimator()
{
  // -----------------------//
  //     FINAL COLLIMATOR   //
  //------------------------//
  const G4double outerRadiusFinalCollimator = 21.5*mm;
  const G4double hightFinalCollimator = 3.5*mm;
  const G4double startAngleFinalCollimator = 0.*deg;
  const G4double spanningAngleFinalCollimator = 360.*deg;
  const G4double finalCollimatorXPosition = -83.5 *mm;  

  G4double phi = 90. *deg;     

  // Matrix definition for a 90 deg rotation. Also used for other volumes       
  G4RotationMatrix rm;
  rm.rotateY(phi);

  solidFinalCollimator = new G4Tubs("FinalCollimator", 
                    innerRadiusFinalCollimator, 
                    outerRadiusFinalCollimator,
                    hightFinalCollimator, 
                    startAngleFinalCollimator, 
                    spanningAngleFinalCollimator);

  G4LogicalVolume* logicFinalCollimator = new G4LogicalVolume(solidFinalCollimator, 
                                  finalCollimatorMaterial, 
                                  "FinalCollimator", 
                                  0,
                                  0, 
                                  0);

  physiFinalCollimator = new G4PVPlacement(G4Transform3D(rm, G4ThreeVector(finalCollimatorXPosition,0.,0.)),
                       "FinalCollimator", logicFinalCollimator, physicalTreatmentRoom, false, 0); 

  logicFinalCollimator -> SetVisAttributes(yellow); 
}
void PassiveProtonBeamLine::SetRangeShifterXPosition(G4double value)
{
  physiRangeShifterBox -> SetTranslation(G4ThreeVector(value, 0., 0.)); 
  G4RunManager::GetRunManager() -> GeometryHasBeenModified();
  G4cout << "The Range Shifter is translated to"<< value/mm <<"mm along the X axis" <<G4endl;
}

void PassiveProtonBeamLine::SetRangeShifterXSize(G4double value)
{
  solidRangeShifterBox -> SetXHalfLength(value) ;
  G4cout << "RangeShifter size X (mm): "<< ((solidRangeShifterBox -> GetXHalfLength())*2.)/mm
         << G4endl;
  G4RunManager::GetRunManager() -> GeometryHasBeenModified();
}

void PassiveProtonBeamLine::SetFirstScatteringFoilXSize(G4double value)
{ 
  firstScatteringFoil -> SetXHalfLength(value);
  G4RunManager::GetRunManager() -> GeometryHasBeenModified();
  G4cout <<"The X size of the first scattering foil is (mm):"<<  
    ((firstScatteringFoil -> GetXHalfLength())*2.)/mm 
     << G4endl;
}

void PassiveProtonBeamLine::SetSecondScatteringFoilXSize(G4double value)
{
  secondScatteringFoil -> SetXHalfLength(value);
  G4RunManager::GetRunManager() -> GeometryHasBeenModified();
  G4cout <<"The X size of the second scattering foil is (mm):"<<  
    ((secondScatteringFoil -> GetXHalfLength())*2.)/mm 
     << G4endl;
}

void PassiveProtonBeamLine::SetOuterRadiusStopper(G4double value)
{ 
  solidStopper -> SetOuterRadius(value);
  G4RunManager::GetRunManager() -> GeometryHasBeenModified(); 
  G4cout << "OuterRadius od the Stopper is (mm):"
     << solidStopper -> GetOuterRadius()/mm
     << G4endl;
}

void PassiveProtonBeamLine::SetInnerRadiusFinalCollimator(G4double value)
{
  solidFinalCollimator -> SetInnerRadius(value);
  G4RunManager::GetRunManager() -> GeometryHasBeenModified();
  G4cout<<"Inner Radius of the final collimator is (mm):"
    << solidFinalCollimator -> GetInnerRadius()/mm
    << G4endl; 
}

void PassiveProtonBeamLine::SetRSMaterial(G4String materialChoice)
{
    if (G4Material* pttoMaterial = G4NistManager::Instance()->FindOrBuildMaterial(materialChoice, false) )
    {
    if (pttoMaterial) 
    {
        rangeShifterMaterial  = pttoMaterial;
        logicRangeShifterBox -> SetMaterial(pttoMaterial);  
        G4cout << "The material of the Range Shifter has been changed to " << materialChoice << G4endl;
    }
    }
    else
    {
    G4cout << "WARNING: material \"" << materialChoice << "\" doesn't exist in NIST elements/materials"
        " table [located in $G4INSTALL/source/materials/src/G4NistMaterialBuilder.cc]" << G4endl; 
    G4cout << "Use command \"/parameter/nist\" to see full materials list!" << G4endl; 
    }
}

void PassiveProtonBeamLine::SetModulatorAngle(G4double value)
{  
  modulator -> SetModulatorAngle(value);
  //G4RunManager::GetRunManager() -> GeometryHasBeenModified();
}