Geant4_10
ChromosomeParameterisation.cc
Go to the documentation of this file.
1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // and the DNA geometry given in the Geom_DNA example
29 // shall cite the following Geant4-DNA collaboration publications:
30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at http://geant4-dna.org
33 //
34 
35 #include "G4VPhysicalVolume.hh"
36 #include "G4ThreeVector.hh"
37 #include "G4Box.hh"
39 #include <fstream>
40 #include "G4SystemOfUnits.hh"
41 
42 using namespace std;
43 
44 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
45 
47 {
48  ifstream f(filename, ios::in);
49  if (!f)
50  return;
51 
52  fPositions.reserve(100);
53  fRotations.reserve(100);
54 
55  while (!f.eof())
56  {
57  double x, y, z, rot;
58  f >> x >> y >> z >> rot;
59  fPositions.push_back(new G4ThreeVector(x * nanometer, y * nanometer, z * nanometer));
60  fRotations.push_back(new G4RotationMatrix(0, 0, rot * degree));
61  }
62 }
63 
64 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
65 
67 {
68  unsigned int i;
69  for (i = 0; i < fPositions.size(); i++)
70  delete fPositions[i];
71  for (i = 0; i < fRotations.size(); i++)
72  delete fRotations[i];
73 }
74 
75 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
76 
78  G4Tubs& /*rosette*/, const G4int /*copyNo*/, const G4VPhysicalVolume* /*physVol*/) const
79 {
80 
81 }
82 
83 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
84 
86  const G4int copyNo, G4VPhysicalVolume* physVol) const
87 {
88  // see passive vs active method to specify
89  // this transformation
90  physVol->SetTranslation(*fPositions[copyNo]);
91  physVol->SetRotation(fRotations[copyNo]);
92 }
CLHEP::Hep3Vector G4ThreeVector
CLHEP::HepRotation G4RotationMatrix
ifstream in
Definition: comparison.C:7
Definition: G4Tubs.hh:84
ChromosomeParameterisation(const char *filename)
tuple x
Definition: test.py:50
int G4int
Definition: G4Types.hh:78
TFile f
Definition: plotHisto.C:6
void ComputeTransformation(const G4int copyNo, G4VPhysicalVolume *physVol) const
void SetRotation(G4RotationMatrix *)
int nanometer
Definition: hepunit.py:35
Double_t y
Definition: plot.C:279
tuple degree
Definition: hepunit.py:69
void SetTranslation(const G4ThreeVector &v)
tuple z
Definition: test.py:28
void ComputeDimensions(G4Tubs &rosette, const G4int copyNo, const G4VPhysicalVolume *physVol) const