Geant4  10.03.p02
 All Classes Namespaces Files Functions Variables Typedefs Enumerations Enumerator Friends Macros Groups Pages
PDBresidue.cc
Go to the documentation of this file.
1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // shall cite the following Geant4-DNA collaboration publication:
29 // Med. Phys. 37 (2010) 4692-4708
30 // Delage et al. PDB4DNA: implementation of DNA geometry from the Protein Data
31 // Bank (PDB) description for Geant4-DNA Monte-Carlo
32 // simulations (submitted to Comput. Phys. Commun.)
33 // The Geant4-DNA web site is available at http://geant4-dna.org
34 //
35 // $Id$
36 //
39 
40 #include "PDBresidue.hh"
41 
42 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
43 
44 Residue::Residue():fResName(""),fResSeq(0),fVisible(false),fSelected(false),
45 fCenterX(0),fCenterY(0),fCenterZ(0),fNbAtom(0),fpNext(0),fpFirst(0)
46 {
47 }
48 
49 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
50 
51 Residue::Residue(const std::string& rN,int rS)
52 {
53  fResName=rN;// Residue name
54  fResSeq=rS; // Residue sequence number
55  fVisible=false;
56  fSelected=false;
57  fCenterX=0;
58  fCenterY=0;
59  fCenterZ=0;
60  fNbAtom=0;
61  fpNext=0;
62  fpFirst=0;
63 }
64 
65 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
66 
68 {
69  return fpNext;
70 }
71 
72 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
73 
75 {
76  return fpFirst;
77 }
78 
79 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
80 
82 {
83  return fResSeq;
84 }
85 
86 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
87 
88 void Residue::SetNext(Residue *residueNext)
89 {
90  fpNext=residueNext;
91 }
92 
93 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
94 
95 void Residue::SetFirst(Atom *atomFirst)
96 {
97  fpFirst=atomFirst;
98 }
int fCenterZ
Definition: PDBresidue.hh:87
int fNbAtom
Number of atoms into a residue (usage before vector)
Definition: PDBresidue.hh:88
int fCenterX
Definition: PDBresidue.hh:85
Residue * GetNext()
Get the next residue.
Definition: PDBresidue.cc:67
int GetID()
Get the number of the residue.
Definition: PDBresidue.cc:81
Residue Class.
Definition: PDBresidue.hh:58
std::string fResName
Residue name.
Definition: PDBresidue.hh:81
int fCenterY
Definition: PDBresidue.hh:86
Atom Class.
Definition: PDBatom.hh:56
bool fVisible
Whether Residue is visible or not.
Definition: PDBresidue.hh:83
Atom * GetFirst()
Get the first atom.
Definition: PDBresidue.cc:74
void SetNext(Residue *)
Set the next residue.
Definition: PDBresidue.cc:88
int fResSeq
Residue sequence number.
Definition: PDBresidue.hh:82
bool fSelected
Whether Residue is selected (Highlight) or not.
Definition: PDBresidue.hh:84
Definition of the PDBresidue class.
Residue()
Constructor.
Definition: PDBresidue.cc:44
void SetFirst(Atom *)
Set the first Atom of the residue.
Definition: PDBresidue.cc:95