Geant4  10.02
ChromosomeParameterisation.cc
Go to the documentation of this file.
1 //
2 // ********************************************************************
3 // * License and Disclaimer *
4 // * *
5 // * The Geant4 software is copyright of the Copyright Holders of *
6 // * the Geant4 Collaboration. It is provided under the terms and *
7 // * conditions of the Geant4 Software License, included in the file *
8 // * LICENSE and available at http://cern.ch/geant4/license . These *
9 // * include a list of copyright holders. *
10 // * *
11 // * Neither the authors of this software system, nor their employing *
12 // * institutes,nor the agencies providing financial support for this *
13 // * work make any representation or warranty, express or implied, *
14 // * regarding this software system or assume any liability for its *
15 // * use. Please see the license in the file LICENSE and URL above *
16 // * for the full disclaimer and the limitation of liability. *
17 // * *
18 // * This code implementation is the result of the scientific and *
19 // * technical work of the GEANT4 collaboration. *
20 // * By using, copying, modifying or distributing the software (or *
21 // * any work based on the software) you agree to acknowledge its *
22 // * use in resulting scientific publications, and indicate your *
23 // * acceptance of all terms of the Geant4 Software license. *
24 // ********************************************************************
25 //
26 // This example is provided by the Geant4-DNA collaboration
27 // Any report or published results obtained using the Geant4-DNA software
28 // and the DNA geometry given in the Geom_DNA example
29 // shall cite the following Geant4-DNA collaboration publications:
30 // [1] NIM B 298 (2013) 47-54
31 // [2] Med. Phys. 37 (2010) 4692-4708
32 // The Geant4-DNA web site is available at http://geant4-dna.org
33 //
34 // $ID$
37 
39 
40 // STD
41 #include <fstream>
42 
43 // G4
44 #include <CLHEP/Units/SystemOfUnits.h>
45 #include <G4VPhysicalVolume.hh>
46 
47 using namespace std;
48 using CLHEP::nanometer;
49 using CLHEP::degree;
50 
51 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
52 
55 {
56  ifstream f(filename, ios::in);
57  if (!f)
58  return;
59 
60  fPositions.reserve(100);
61  fRotations.reserve(100);
62 
63  while (!f.eof())
64  {
65  double x, y, z, rot;
66  f >> x >> y >> z >> rot;
67  fPositions.push_back(new G4ThreeVector(x * nanometer,
68  y * nanometer,
69  z * nanometer));
70  fRotations.push_back(new G4RotationMatrix(0, 0, rot * degree));
71  }
72 }
73 
74 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
75 
77 {
78  unsigned int i;
79  for (i = 0; i < fPositions.size(); i++)
80  delete fPositions[i];
81  for (i = 0; i < fRotations.size(); i++)
82  delete fRotations[i];
83 }
84 
85 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
86 
88  G4Tubs& /*rosette*/,
89  const G4int /*copyNo*/,
90  const G4VPhysicalVolume* /*physVol*/) const
91 {
92 
93 }
94 
95 //....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
96 
98  const G4int copyNo, G4VPhysicalVolume* physVol) const
99 {
100  // see passive vs active method to specify
101  // this transformation
102  physVol->SetTranslation(*fPositions[copyNo]);
103  physVol->SetRotation(fRotations[copyNo]);
104 }
std::vector< G4ThreeVector * > fPositions
CLHEP::Hep3Vector G4ThreeVector
CLHEP::HepRotation G4RotationMatrix
G4double z
Definition: TRTMaterials.hh:39
static const double nanometer
Definition: G4SIunits.hh:100
Definition: G4Tubs.hh:85
ChromosomeParameterisation(const char *filename)
int G4int
Definition: G4Types.hh:78
virtual void ComputeTransformation(const G4int copyNo, G4VPhysicalVolume *physVol) const
void SetRotation(G4RotationMatrix *)
std::vector< G4RotationMatrix * > fRotations
void SetTranslation(const G4ThreeVector &v)
Definition of the ChromosomeParameterisation class.
const G4double x[NPOINTSGL]
static const double degree
Definition: G4SIunits.hh:143
virtual void ComputeDimensions(G4Tubs &rosette, const G4int copyNo, const G4VPhysicalVolume *physVol) const