Geant4  10.02.p02
G4DNAMolecularReactionTable Class Reference

G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction. More...

#include <G4DNAMolecularReactionTable.hh>

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Public Member Functions

virtual ~G4DNAMolecularReactionTable ()
 
void SetReaction (G4double observedReactionRate, G4MolecularConfiguration *reactive1, G4MolecularConfiguration *reactive2)
 Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products. More...
 
void SetReaction (G4DNAMolecularReactionData *)
 
const G4DNAMolecularReactionDataGetReactionData (G4MolecularConfiguration *, G4MolecularConfiguration *) const
 
const G4DNAMolecularReactionDataGetReactionData (const G4String &, const G4String &) const
 
const G4DNAMolecularReactionDataGetReaction (int reactionID) const
 
size_t GetNReactions () const
 
const std::vector
< G4MolecularConfiguration * > * 
CanReactWith (G4MolecularConfiguration *) const
 Given a molecule's type, it returns with which a reaction is allowed. More...
 
const std::map
< G4MolecularConfiguration
*, const
G4DNAMolecularReactionData * > * 
GetReativesNData (G4MolecularConfiguration *) const
 
const std::vector< const
G4DNAMolecularReactionData * > * 
GetReactionData (G4MolecularConfiguration *) const
 
const std::map
< G4MolecularConfiguration
*, std::map
< G4MolecularConfiguration
*, const
G4DNAMolecularReactionData * > > & 
GetAllReactionData ()
 
const std::vector< const
G4DNAMolecularReactionData * > & 
GetVectorOfReactionData ()
 
void ScaleReactionRateForNewTemperature (double temp_K)
 
void PrintTable (G4VDNAReactionModel *=0)
 
- Public Member Functions inherited from G4ITReactionTable
 G4ITReactionTable ()
 Default constructor. More...
 
virtual ~G4ITReactionTable ()
 Default destructor. More...
 
 G4ITReactionTable (const G4ITReactionTable &)
 Copy constructor. More...
 
G4ITReactionTableoperator= (const G4ITReactionTable &)
 Assignment operator. More...
 

Static Public Member Functions

static
G4DNAMolecularReactionTable
GetReactionTable ()
 
static
G4DNAMolecularReactionTable
Instance ()
 
static void DeleteInstance ()
 

Protected Types

typedef std::map
< G4MolecularConfiguration
*, std::map
< G4MolecularConfiguration
*, const
G4DNAMolecularReactionData * > > 
ReactionDataMap
 
typedef std::map
< G4MolecularConfiguration
*, std::vector
< G4MolecularConfiguration * > > 
ReactivesMV
 
typedef std::map
< G4MolecularConfiguration
*, std::vector< const
G4DNAMolecularReactionData * > > 
ReactionDataMV
 

Protected Member Functions

 G4DNAMolecularReactionTable ()
 

Protected Attributes

G4bool fVerbose
 
ReactionDataMap fReactionData
 
ReactivesMV fReactantsMV
 
ReactionDataMV fReactionDataMV
 
std::vector< const
G4DNAMolecularReactionData * > 
fVectorOfReactionData
 
G4ReactionTableMessengerfpMessenger
 

Static Protected Attributes

static
G4DNAMolecularReactionTable
fInstance
 

Detailed Description

G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction.

Definition at line 199 of file G4DNAMolecularReactionTable.hh.

Member Typedef Documentation

Definition at line 279 of file G4DNAMolecularReactionTable.hh.

Constructor & Destructor Documentation

G4DNAMolecularReactionTable::G4DNAMolecularReactionTable ( )
protected

Definition at line 243 of file G4DNAMolecularReactionTable.cc.

References fpMessenger, and fVerbose.

Referenced by GetReactionTable(), and Instance().

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G4DNAMolecularReactionTable::~G4DNAMolecularReactionTable ( )
virtual

Definition at line 255 of file G4DNAMolecularReactionTable.cc.

References fpMessenger, fReactantsMV, fReactionData, fReactionDataMV, G4DNAMolecularReactionData::GetReactant1(), and G4DNAMolecularReactionData::GetReactant2().

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Member Function Documentation

const std::vector< G4MolecularConfiguration * > * G4DNAMolecularReactionTable::CanReactWith ( G4MolecularConfiguration aMolecule) const

Given a molecule's type, it returns with which a reaction is allowed.

Definition at line 544 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactantsMV, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by G4DNAMoleculeEncounterStepper::CalculateStep(), and PrintTable().

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void G4DNAMolecularReactionTable::DeleteInstance ( )
static

Definition at line 233 of file G4DNAMolecularReactionTable.cc.

References fInstance.

Referenced by G4DNAChemistryManager::Clear().

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const std::map<G4MolecularConfiguration*, std::map<G4MolecularConfiguration*, const G4DNAMolecularReactionData*> >& G4DNAMolecularReactionTable::GetAllReactionData ( )
inline

Definition at line 253 of file G4DNAMolecularReactionTable.hh.

References fReactionData.

size_t G4DNAMolecularReactionTable::GetNReactions ( ) const
inline

Definition at line 234 of file G4DNAMolecularReactionTable.hh.

References fVectorOfReactionData.

const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReaction ( int  reactionID) const

Definition at line 744 of file G4DNAMolecularReactionTable.cc.

References fVectorOfReactionData.

const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReactionData ( G4MolecularConfiguration reactant1,
G4MolecularConfiguration reactant2 
) const

Definition at line 501 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

Referenced by GetReactionData(), G4DNASmoluchowskiReactionModel::GetReactionRadius(), G4DNASmoluchowskiReactionModel::Initialise(), G4DNASmoluchowskiReactionModel::InitialiseToPrint(), and G4DNAMolecularReaction::MakeReaction().

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const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReactionData ( const G4String mol1,
const G4String mol2 
) const

Definition at line 666 of file G4DNAMolecularReactionTable.cc.

References G4MoleculeTable::GetConfiguration(), G4MoleculeTable::GetMoleculeTable(), and GetReactionData().

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const std::vector< const G4DNAMolecularReactionData * > * G4DNAMolecularReactionTable::GetReactionData ( G4MolecularConfiguration molecule) const

Definition at line 640 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionDataMV, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

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G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::GetReactionTable ( )
static

Definition at line 211 of file G4DNAMolecularReactionTable.cc.

References fInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAMolecularStepByStepModel::Initialize(), G4DNAChemistryManager::InitializeMaster(), and G4DNAChemistryManager::InitializeThread().

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const std::map< G4MolecularConfiguration *, const G4DNAMolecularReactionData * > * G4DNAMolecularReactionTable::GetReativesNData ( G4MolecularConfiguration molecule) const

Definition at line 594 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, fVerbose, G4cout, G4endl, G4Exception(), and G4MolecularConfiguration::GetName().

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const std::vector<const G4DNAMolecularReactionData*>& G4DNAMolecularReactionTable::GetVectorOfReactionData ( )
inline

Definition at line 259 of file G4DNAMolecularReactionTable.hh.

References fVectorOfReactionData.

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::Instance ( void  )
static

Definition at line 222 of file G4DNAMolecularReactionTable.cc.

References fInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::PrintTable ( G4VDNAReactionModel pReactionModel = 0)

Definition at line 325 of file G4DNAMolecularReactionTable.cc.

References CanReactWith(), G4UIcommand::ConvertToString(), fReactantsMV, fReactionData, G4cout, G4endl, G4MolecularConfiguration::GetName(), G4DNAMolecularReactionData::GetNbProducts(), G4DNAMolecularReactionData::GetObservedReactionRateConstant(), G4DNAMolecularReactionData::GetProduct(), G4VDNAReactionModel::GetReactionRadius(), G4VDNAReactionModel::GetReactionTable(), G4VDNAReactionModel::InitialiseToPrint(), left, m3, mole, n, nanometer, s, G4VDNAReactionModel::SetReactionTable(), and TRUE.

Referenced by G4EmDNAChemistry::ConstructTimeStepModel(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::ScaleReactionRateForNewTemperature ( double  temp_K)

Definition at line 712 of file G4DNAMolecularReactionTable.cc.

References fVectorOfReactionData.

Referenced by G4DNAChemistryManager::SetGlobalTemperature().

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void G4DNAMolecularReactionTable::SetReaction ( G4double  observedReactionRate,
G4MolecularConfiguration reactive1,
G4MolecularConfiguration reactive2 
)

Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products.

Definition at line 314 of file G4DNAMolecularReactionTable.cc.

Referenced by G4EmDNAChemistry::ConstructReactionTable(), and G4ReactionTableMessenger::SetNewValue().

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void G4DNAMolecularReactionTable::SetReaction ( G4DNAMolecularReactionData reactionData)

Definition at line 293 of file G4DNAMolecularReactionTable.cc.

References fReactantsMV, fReactionData, fReactionDataMV, fVectorOfReactionData, G4DNAMolecularReactionData::GetReactant1(), and G4DNAMolecularReactionData::GetReactant2().

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Member Data Documentation

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::fInstance
staticprotected

Definition at line 203 of file G4DNAMolecularReactionTable.hh.

Referenced by DeleteInstance(), GetReactionTable(), and Instance().

G4ReactionTableMessenger* G4DNAMolecularReactionTable::fpMessenger
protected
ReactivesMV G4DNAMolecularReactionTable::fReactantsMV
protected
ReactionDataMap G4DNAMolecularReactionTable::fReactionData
protected
ReactionDataMV G4DNAMolecularReactionTable::fReactionDataMV
protected
std::vector<const G4DNAMolecularReactionData*> G4DNAMolecularReactionTable::fVectorOfReactionData
protected
G4bool G4DNAMolecularReactionTable::fVerbose
protected

The documentation for this class was generated from the following files: