G4PenelopeCrossSection.cc

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// $Id: G4PenelopeCrossSection.cc 97613 2016-06-06 12:24:51Z gcosmo $
//
// Author: Luciano Pandola
//
// History:
// --------
// 18 Mar 2010   L Pandola    First implementation
// 09 Mar 2012   L. Pandola   Add public method (and machinery) to return
//                            the absolute and the normalized shell cross
//                            sections independently.
//
#include "G4PenelopeCrossSection.hh"
#include "G4SystemOfUnits.hh"
#include "G4PhysicsTable.hh"
#include "G4PhysicsFreeVector.hh"
#include "G4DataVector.hh"
#include "G4Exp.hh"

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...
G4PenelopeCrossSection::G4PenelopeCrossSection(size_t nPointsE,size_t nShells) :
  numberOfEnergyPoints(nPointsE),numberOfShells(nShells),softCrossSections(0),
  hardCrossSections(0),shellCrossSections(0),shellNormalizedCrossSections(0)
{
  //check the number of points is not zero
  if (!numberOfEnergyPoints)
    {
      G4ExceptionDescription ed;
      ed << "G4PenelopeCrossSection: invalid number of energy points " << G4endl;
      G4Exception("G4PenelopeCrossSection::G4PenelopeCrossSection()",
                  "em2017",FatalException,ed);
    }

  isNormalized = false;

  // 1) soft XS table
  softCrossSections = new G4PhysicsTable();
  //the table contains 3 G4PhysicsFreeVectors,
  //(softCrossSections)[0] -->  log XS0 vs. log E
  //(softCrossSections)[1] -->  log XS1 vs. log E
  //(softCrossSections)[2] -->  log XS2 vs. log E

  //everything is log-log
  for (size_t i=0;i<3;i++)
    softCrossSections->push_back(new G4PhysicsFreeVector(numberOfEnergyPoints));

  //2) hard XS table
  hardCrossSections = new G4PhysicsTable();
  //the table contains 3 G4PhysicsFreeVectors,
  //(hardCrossSections)[0] -->  log XH0 vs. log E
  //(hardCrossSections)[1] -->  log XH1 vs. log E
  //(hardCrossSections)[2] -->  log XH2 vs. log E

  //everything is log-log
  for (size_t i=0;i<3;i++)
    hardCrossSections->push_back(new G4PhysicsFreeVector(numberOfEnergyPoints));

  //3) shell XS table, if it is the case
  if (numberOfShells)
    {
      shellCrossSections = new G4PhysicsTable();
      shellNormalizedCrossSections = new G4PhysicsTable();
      //the table has to contain numberofShells G4PhysicsFreeVectors,
      //(theTable)[ishell] --> cross section for shell #ishell
      for (size_t i=0;i<numberOfShells;i++)
        {
          shellCrossSections->push_back(new G4PhysicsFreeVector(numberOfEnergyPoints));
          shellNormalizedCrossSections->push_back(new G4PhysicsFreeVector(numberOfEnergyPoints));
        }
    }
}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...
G4PenelopeCrossSection::~G4PenelopeCrossSection()
{
  //clean up tables
  if (shellCrossSections)
    {
      //shellCrossSections->clearAndDestroy();
      delete shellCrossSections;
    }
  if (shellNormalizedCrossSections)
    {
      //shellNormalizedCrossSections->clearAndDestroy();
      delete shellNormalizedCrossSections;
    }
  if (softCrossSections)
    {
      //softCrossSections->clearAndDestroy();
      delete softCrossSections;
    }
  if (hardCrossSections)
    {
      //hardCrossSections->clearAndDestroy();
      delete hardCrossSections;
    }
}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...
void G4PenelopeCrossSection::AddCrossSectionPoint(size_t binNumber,G4double energy,
                                                  G4double XH0,
                                                  G4double XH1, G4double XH2,
                                                  G4double XS0, G4double XS1,
                                                  G4double XS2)
{
  if (!softCrossSections || !hardCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::AddCrossSectionPoint" <<
        G4endl;
      G4cout << "Trying to fill un-initialized tables" << G4endl;
      return;
    }

  //fill vectors
  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*softCrossSections)[0];

  if (binNumber >= numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::AddCrossSectionPoint" <<
        G4endl;
      G4cout << "Trying to register more points than originally declared" << G4endl;
      return;
    }
   G4double logEne = std::log(energy);

   //XS0
   G4double val = std::log(std::max(XS0,1e-42*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   //XS1
   theVector = (G4PhysicsFreeVector*) (*softCrossSections)[1];
   val =  std::log(std::max(XS1,1e-42*eV*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   //XS2
   theVector = (G4PhysicsFreeVector*) (*softCrossSections)[2];
   val =  std::log(std::max(XS2,1e-42*eV*eV*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   //XH0
   theVector = (G4PhysicsFreeVector*) (*hardCrossSections)[0];
   val =  std::log(std::max(XH0,1e-42*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   //XH1
   theVector = (G4PhysicsFreeVector*) (*hardCrossSections)[1];
   val =  std::log(std::max(XH1,1e-42*eV*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

    //XH2
   theVector = (G4PhysicsFreeVector*) (*hardCrossSections)[2];
   val =  std::log(std::max(XH2,1e-42*eV*eV*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   return;
}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...

void G4PenelopeCrossSection::AddShellCrossSectionPoint(size_t binNumber,
                                                       size_t shellID,
                                                       G4double energy,
                                                       G4double xs)
{
  if (!shellCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::AddShellCrossSectionPoint" <<
        G4endl;
      G4cout << "Trying to fill un-initialized table" << G4endl;
      return;
    }

  if (shellID >= numberOfShells)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::AddShellCrossSectionPoint" <<
        G4endl;
      G4cout << "Trying to fill shell #" << shellID << " while the maximum is "
             <<  numberOfShells-1 << G4endl;
      return;
    }

  //fill vector
  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*shellCrossSections)[shellID];

  if (binNumber >= numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::AddShellCrossSectionPoint" <<
        G4endl;
      G4cout << "Trying to register more points than originally declared" << G4endl;
      return;
    }
   G4double logEne = std::log(energy);
   G4double val = std::log(std::max(xs,1e-42*cm2)); //avoid log(0)
   theVector->PutValue(binNumber,logEne,val);

   return;
}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...

G4double G4PenelopeCrossSection::GetTotalCrossSection(G4double energy) const
{
  G4double result = 0;
  //take here XS0 + XH0
  if (!softCrossSections || !hardCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetTotalCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return result;
    }

  // 1) soft part
  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*softCrossSections)[0];
  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetTotalCrossSection" <<
        G4endl;
      G4cout << "Soft cross section table looks not filled" << G4endl;
      return result;
    }
  G4double logene = std::log(energy);
  G4double logXS = theVector->Value(logene);
  G4double softXS = G4Exp(logXS);

   // 2) hard part
  theVector = (G4PhysicsFreeVector*) (*hardCrossSections)[0];
  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetTotalCrossSection" <<
        G4endl;
      G4cout << "Hard cross section table looks not filled" << G4endl;
      return result;
    }
  logXS = theVector->Value(logene);
  G4double hardXS = G4Exp(logXS);

  result = hardXS + softXS;
  return result;

}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...

G4double G4PenelopeCrossSection::GetHardCrossSection(G4double energy) const
{
  G4double result = 0;
  //take here XH0
  if (!hardCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetHardCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return result;
    }

  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*hardCrossSections)[0];
  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetHardCrossSection" <<
        G4endl;
      G4cout << "Hard cross section table looks not filled" << G4endl;
      return result;
    }
  G4double logene = std::log(energy);
  G4double logXS = theVector->Value(logene);
  result = G4Exp(logXS);

  return result;
}


//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo...

G4double G4PenelopeCrossSection::GetSoftStoppingPower(G4double energy) const
{
  G4double result = 0;
  //take here XH0
  if (!softCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetSoftStoppingPower" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return result;
    }

  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*softCrossSections)[1];
  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetSoftStoppingPower" <<
        G4endl;
      G4cout << "Soft cross section table looks not filled" << G4endl;
      return result;
    }
  G4double logene = std::log(energy);
  G4double logXS = theVector->Value(logene);
  result = G4Exp(logXS);

  return result;
}

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo..

G4double G4PenelopeCrossSection::GetShellCrossSection(size_t shellID,G4double energy) const
{
  G4double result = 0;
  if (!shellCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return result;
    }
  if (shellID >= numberOfShells)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve shell #" << shellID << " while the maximum is "
             <<  numberOfShells-1 << G4endl;
      return result;
    }

  G4PhysicsFreeVector* theVector = (G4PhysicsFreeVector*) (*shellCrossSections)[shellID];

  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Shell cross section table looks not filled" << G4endl;
      return result;
    }
  G4double logene = std::log(energy);
  G4double logXS = theVector->Value(logene);
  result = G4Exp(logXS);

  return result;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo..

G4double G4PenelopeCrossSection::GetNormalizedShellCrossSection(size_t shellID,G4double energy) const
{
  G4double result = 0;
  if (!shellNormalizedCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return result;
    }

  if (!isNormalized)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" << G4endl;
      G4cout << "The table of normalized cross section is not initialized" << G4endl;
    }


  if (shellID >= numberOfShells)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve shell #" << shellID << " while the maximum is "
             <<  numberOfShells-1 << G4endl;
      return result;
    }

  const G4PhysicsFreeVector* theVector =
    (G4PhysicsFreeVector*) (*shellNormalizedCrossSections)[shellID];

  if (theVector->GetVectorLength() < numberOfEnergyPoints)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Shell cross section table looks not filled" << G4endl;
      return result;
    }
  G4double logene = std::log(energy);
  G4double logXS = theVector->Value(logene);
  result = G4Exp(logXS);

  return result;
}



//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo..

void G4PenelopeCrossSection::NormalizeShellCrossSections()
{
  if (isNormalized) //already done!
    {
      G4cout << "G4PenelopeCrossSection::NormalizeShellCrossSections()" << G4endl;
      G4cout << "already invoked. Ignore it" << G4endl;
      return;
    }

  if (!shellNormalizedCrossSections)
    {
      G4cout << "Something wrong in G4PenelopeCrossSection::GetShellCrossSection" <<
        G4endl;
      G4cout << "Trying to retrieve from un-initialized tables" << G4endl;
      return;
    }

  for (size_t i=0;i<numberOfEnergyPoints;i++) //loop on energy
    {
      //energy grid is the same for all shells

      //Recalculate manually the XS factor, to avoid problems with
      //underflows
      G4double normFactor = 0.;
      for (size_t shellID=0;shellID<numberOfShells;shellID++)
        {
          G4PhysicsFreeVector* theVec =
            (G4PhysicsFreeVector*) (*shellCrossSections)[shellID];

          normFactor += G4Exp((*theVec)[i]);
        }
      G4double logNormFactor = std::log(normFactor);
      //Normalize
      for (size_t shellID=0;shellID<numberOfShells;shellID++)
        {
         G4PhysicsFreeVector* theVec =
            (G4PhysicsFreeVector*) (*shellNormalizedCrossSections)[shellID];
         G4PhysicsFreeVector* theFullVec =
           (G4PhysicsFreeVector*) (*shellCrossSections)[shellID];
         G4double previousValue = (*theFullVec)[i]; //log(XS)
         G4double logEnergy = theFullVec->GetLowEdgeEnergy(i);
         //log(XS/normFactor) = log(XS) - log(normFactor)
         theVec->PutValue(i,logEnergy,previousValue-logNormFactor);
        }
    }

  isNormalized = true;


  /*
  //TESTING
  for (size_t shellID=0;shellID<numberOfShells;shellID++)
    {
      G4cout << "SHELL " << shellID << G4endl;
      G4PhysicsFreeVector* theVec =
        (G4PhysicsFreeVector*) (*shellCrossSections)[shellID];
      for (size_t i=0;i<numberOfEnergyPoints;i++) //loop on energy
        {
          G4double logene = theVec->GetLowEdgeEnergy(i);
          G4cout << G4Exp(logene)/MeV << " " << G4Exp((*theVec)[i]) << G4endl;
        }
    }
  */

  return;
}