#include <PDBbarycenter.hh>
Collaboration diagram for Barycenter:Public Member Functions | |
| Barycenter () | |
| First constructor. More... | |
| Barycenter (int bNum, double x, double y, double z, double Bx, double By, double Bz, double Sx, double Sy, double Sz, double Px, double Py, double Pz) | |
| Second constructor. More... | |
| ~Barycenter () | |
| Destructor. More... | |
| Barycenter * | GetNext () |
| Get the next Barycenter. More... | |
| int | GetID () |
| Get the first. More... | |
| void | SetNext (Barycenter *) |
| Set the next Barycenter. More... | |
| void | SetDistance (int i, double) |
| Set the distance between atom i and nucleotide barycenter. More... | |
| double | GetDistance (int i) |
| Get the distance between atom i and nucleotide barycenter. More... | |
| void | SetRadius (double) |
| Set the distance between the farther atom and nucleotide barycenter. More... | |
| double | GetRadius () |
| Get the distance between the farther atom and nucleotide barycenter. More... | |
Public Attributes | |
| int | fBaryNum |
| Barycenter number. More... | |
| double | fDistanceTab [33] |
| distance table [0..32] (11 hydrogens!) More... | |
| double | fRadius |
| double | fCenterX |
| "X coordinate" of this nucelotide Barycenter More... | |
| double | fCenterY |
| "Y coordinate" of this nucelotide Barycenter More... | |
| double | fCenterZ |
| "Z coordinate" of this nucelotide Barycenter More... | |
| double | fCenterBaseX |
| "X coordinate" of this Base Barycenter More... | |
| double | fCenterBaseY |
| "Y coordinate" of this Base Barycenter More... | |
| double | fCenterBaseZ |
| "Z coordinate" of this Base Barycenter More... | |
| double | fCenterSugarX |
| "X coordinate" of this Sugar Barycenter More... | |
| double | fCenterSugarY |
| "Y coordinate" of this Sugar Barycenter More... | |
| double | fCenterSugarZ |
| "Z coordinate" of this Sugar Barycenter More... | |
| double | fCenterPhosphateX |
| "X coordinate" of this Phosphate Barycenter More... | |
| double | fCenterPhosphateY |
| "Y coordinate" of this Phosphate Barycenter More... | |
| double | fCenterPhosphateZ |
| "Z coordinate" of this Phosphate Barycenter More... | |
Private Attributes | |
| Barycenter * | fpNext |
| Header of the next Molecule (usage before vector) More... | |
Detailed Description
Molecule Class.
This Class define Molecule model ...
Definition at line 54 of file PDBbarycenter.hh.
Constructor & Destructor Documentation
| Barycenter::Barycenter | ( | ) |
| Barycenter::Barycenter | ( | int | bNum, |
| double | x, | ||
| double | y, | ||
| double | z, | ||
| double | Bx, | ||
| double | By, | ||
| double | Bz, | ||
| double | Sx, | ||
| double | Sy, | ||
| double | Sz, | ||
| double | Px, | ||
| double | Py, | ||
| double | Pz | ||
| ) |
Second constructor.
<Barycenter number
< "X coordinate" of this Base Barycenter
< "Y coordinate" of this Base Barycenter
< "Z coordinate" of this Base Barycenter
< "X coordinate" of this Sugar Barycenter
< "Y coordinate" of this Sugar Barycenter
< "Z coordinate" of this Sugar Barycenter
< "X coordinate" of this Phosphate Barycenter
< "Y coordinate" of this Phosphate Barycenter
< "Z coordinate" of this Phosphate Barycenter
Definition at line 59 of file PDBbarycenter.cc.
References fBaryNum, fCenterBaseX, fCenterBaseY, fCenterBaseZ, fCenterPhosphateX, fCenterPhosphateY, fCenterPhosphateZ, fCenterSugarX, fCenterSugarY, fCenterSugarZ, fCenterX, fCenterY, fCenterZ, fDistanceTab, fpNext, fRadius, x, and z.
|
inline |
Destructor.
Definition at line 65 of file PDBbarycenter.hh.
Member Function Documentation
| double Barycenter::GetDistance | ( | int | i | ) |
Get the distance between atom i and nucleotide barycenter.
Definition at line 113 of file PDBbarycenter.cc.
References fDistanceTab.
| int Barycenter::GetID | ( | ) |
Get the first.
Get number Barycenter
Definition at line 92 of file PDBbarycenter.cc.
References fBaryNum.
| Barycenter * Barycenter::GetNext | ( | ) |
Get the next Barycenter.
Definition at line 87 of file PDBbarycenter.cc.
References fpNext.
Referenced by DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and DetectorConstruction::ResiduesView().
Here is the caller graph for this function:| double Barycenter::GetRadius | ( | ) |
Get the distance between the farther atom and nucleotide barycenter.
Definition at line 127 of file PDBbarycenter.cc.
References fRadius.
Referenced by DetectorConstruction::BarycenterView().
Here is the caller graph for this function:| void Barycenter::SetDistance | ( | int | i, |
| double | dist | ||
| ) |
Set the distance between atom i and nucleotide barycenter.
Definition at line 106 of file PDBbarycenter.cc.
References fDistanceTab.
Referenced by PDBlib::ComputeNucleotideBarycenters().
Here is the caller graph for this function:| void Barycenter::SetNext | ( | Barycenter * | barycenterNext | ) |
| void Barycenter::SetRadius | ( | double | rds | ) |
Set the distance between the farther atom and nucleotide barycenter.
Definition at line 120 of file PDBbarycenter.cc.
References fRadius.
Referenced by PDBlib::ComputeNucleotideBarycenters().
Here is the caller graph for this function:Member Data Documentation
| int Barycenter::fBaryNum |
Barycenter number.
Definition at line 84 of file PDBbarycenter.hh.
Referenced by Barycenter(), and GetID().
| double Barycenter::fCenterBaseX |
"X coordinate" of this Base Barycenter
Definition at line 92 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterBaseY |
"Y coordinate" of this Base Barycenter
Definition at line 93 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterBaseZ |
"Z coordinate" of this Base Barycenter
Definition at line 94 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterPhosphateX |
"X coordinate" of this Phosphate Barycenter
Definition at line 100 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterPhosphateY |
"Y coordinate" of this Phosphate Barycenter
Definition at line 101 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterPhosphateZ |
"Z coordinate" of this Phosphate Barycenter
Definition at line 102 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterSugarX |
"X coordinate" of this Sugar Barycenter
Definition at line 96 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterSugarY |
"Y coordinate" of this Sugar Barycenter
Definition at line 97 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterSugarZ |
"Z coordinate" of this Sugar Barycenter
Definition at line 98 of file PDBbarycenter.hh.
Referenced by Barycenter(), and DetectorConstruction::ResiduesView().
| double Barycenter::fCenterX |
"X coordinate" of this nucelotide Barycenter
Definition at line 88 of file PDBbarycenter.hh.
Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().
| double Barycenter::fCenterY |
"Y coordinate" of this nucelotide Barycenter
Definition at line 89 of file PDBbarycenter.hh.
Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().
| double Barycenter::fCenterZ |
"Z coordinate" of this nucelotide Barycenter
Definition at line 90 of file PDBbarycenter.hh.
Referenced by Barycenter(), DetectorConstruction::BarycenterView(), PDBlib::ComputeMatchEdepDNA(), and PDBlib::ComputeNucleotideBarycenters().
| double Barycenter::fDistanceTab[33] |
distance table [0..32] (11 hydrogens!)
Definition at line 85 of file PDBbarycenter.hh.
Referenced by Barycenter(), GetDistance(), and SetDistance().
|
private |
Header of the next Molecule (usage before vector)
Definition at line 105 of file PDBbarycenter.hh.
Referenced by Barycenter(), GetNext(), and SetNext().
| double Barycenter::fRadius |
Definition at line 86 of file PDBbarycenter.hh.
Referenced by Barycenter(), GetRadius(), and SetRadius().
The documentation for this class was generated from the following files:
- geant4.10.02.p02/examples/extended/medical/dna/pdb4dna/include/PDBbarycenter.hh
- geant4.10.02.p02/examples/extended/medical/dna/pdb4dna/src/PDBbarycenter.cc
