G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction. More...

#include <G4DNAMolecularReactionTable.hh>

Inheritance diagram for G4DNAMolecularReactionTable:

Collaboration diagram for G4DNAMolecularReactionTable:

Public Member Functions
virtual	~G4DNAMolecularReactionTable ()

void	SetReaction (G4double observedReactionRate, const G4Molecule reactive1, const G4Molecule reactive2)
	Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products. More...

void	SetReaction (G4DNAMolecularReactionData *)

const G4DNAMolecularReactionData *	GetReactionData (const G4Molecule , const G4Molecule ) const

const std::vector< const G4Molecule * > *	CanReactWith (const G4Molecule *aMolecule) const
	Given a molecule's type, it returns with which a reaction is allowed. More...

const std::map< const G4Molecule , const G4DNAMolecularReactionData , compMoleculeP > *	GetReativesNData (const G4Molecule *aMolecule) const

const std::vector< const G4DNAMolecularReactionData * > *	GetReactionData (const G4Molecule *) const

void	PrintTable (G4VDNAReactionModel *=0)

Public Member Functions inherited from G4ITReactionTable
	G4ITReactionTable ()
	Default constructor. More...

virtual	~G4ITReactionTable ()
	Default destructor. More...

	G4ITReactionTable (const G4ITReactionTable &)
	Copy constructor. More...

G4ITReactionTable &	operator= (const G4ITReactionTable &)
	Assignment operator. More...

Static Public Member Functions
static G4DNAMolecularReactionTable *	GetReactionTable ()

static void	DeleteInstance ()

Protected Types
typedef std::map< const G4Molecule , std::map< const G4Molecule , const G4DNAMolecularReactionData *, compMoleculeP > , compMoleculeP >	ReactionDataMap

typedef std::map< const G4Molecule , std::vector < const G4Molecule > , compMoleculeP >	ReactivesMV

typedef std::map< const G4Molecule , std::vector < const G4DNAMolecularReactionData > , compMoleculeP >	ReactionDataMV

Protected Member Functions
	G4DNAMolecularReactionTable ()

Protected Attributes
const G4MoleculeHandleManager *	fMoleculeHandleManager

G4bool	fVerbose

ReactionDataMap	fReactionData

ReactivesMV	fReactivesMV

ReactionDataMV	fReactionDataMV

Static Protected Attributes
static G4DNAMolecularReactionTable *	fInstance

Detailed Description

G4DNAMolecularReactionTable sorts out the G4DNAMolecularReactionData for bimolecular reaction.

Definition at line 129 of file G4DNAMolecularReactionTable.hh.

Member Typedef Documentation

typedef std::map<const G4Molecule*, std::map<const G4Molecule*, const G4DNAMolecularReactionData*, compMoleculeP>, compMoleculeP > G4DNAMolecularReactionTable::ReactionDataMap

protected

Definition at line 177 of file G4DNAMolecularReactionTable.hh.

typedef std::map<const G4Molecule*,std::vector<const G4DNAMolecularReactionData*>,compMoleculeP> G4DNAMolecularReactionTable::ReactionDataMV

protected

Definition at line 179 of file G4DNAMolecularReactionTable.hh.

typedef std::map<const G4Molecule*,std::vector<const G4Molecule*>,compMoleculeP> G4DNAMolecularReactionTable::ReactivesMV

protected

Definition at line 178 of file G4DNAMolecularReactionTable.hh.

Constructor & Destructor Documentation

G4DNAMolecularReactionTable::G4DNAMolecularReactionTable ( )

protected

Definition at line 210 of file G4DNAMolecularReactionTable.cc.

References fVerbose.

Referenced by GetReactionTable().

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G4DNAMolecularReactionTable::~G4DNAMolecularReactionTable ( )

virtual

Definition at line 219 of file G4DNAMolecularReactionTable.cc.

References fReactionData, fReactionDataMV, and fReactivesMV.

Member Function Documentation

const std::vector< const G4Molecule * > * G4DNAMolecularReactionTable::CanReactWith ( const G4Molecule * aMolecule ) const

Given a molecule's type, it returns with which a reaction is allowed.

Definition at line 495 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactivesMV, fVerbose, G4cout, G4endl, G4Exception(), and G4Molecule::GetName().

Referenced by G4DNAMoleculeEncounterStepper::CalculateStep(), and PrintTable().

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void G4DNAMolecularReactionTable::DeleteInstance ( )

static

Definition at line 202 of file G4DNAMolecularReactionTable.cc.

References fInstance.

Referenced by G4DNAChemistryManager::Clear().

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const G4DNAMolecularReactionData * G4DNAMolecularReactionTable::GetReactionData	(	const G4Molecule *	reactive1,
		const G4Molecule *	reactive2
	)		const

Definition at line 455 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, G4cout, G4endl, G4Exception(), and G4Molecule::GetName().

Referenced by G4DNASmoluchowskiReactionModel::GetReactionRadius(), G4DNASmoluchowskiReactionModel::Initialise(), G4DNASmoluchowskiReactionModel::InitialiseToPrint(), and G4DNAMolecularReaction::MakeReaction().

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const std::vector< const G4DNAMolecularReactionData * > * G4DNAMolecularReactionTable::GetReactionData ( const G4Molecule * molecule ) const

Definition at line 590 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionDataMV, G4cout, G4endl, G4Exception(), and G4Molecule::GetName().

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G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::GetReactionTable ( )

static

Definition at line 193 of file G4DNAMolecularReactionTable.cc.

References fInstance, and G4DNAMolecularReactionTable().

Referenced by G4DNAMolecularStepByStepModel::Initialize(), G4DNAChemistryManager::InitializeMaster(), and G4DNAChemistryManager::InitializeThread().

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const std::map< const G4Molecule *, const G4DNAMolecularReactionData *, compMoleculeP > * G4DNAMolecularReactionTable::GetReativesNData ( const G4Molecule * aMolecule ) const

Definition at line 545 of file G4DNAMolecularReactionTable.cc.

References FatalErrorInArgument, fReactionData, fVerbose, G4cout, G4endl, G4Exception(), and G4Molecule::GetName().

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void G4DNAMolecularReactionTable::PrintTable ( G4VDNAReactionModel * pReactionModel = 0 )

Definition at line 280 of file G4DNAMolecularReactionTable.cc.

References CanReactWith(), G4UIcommand::ConvertToString(), fReactionData, fReactivesMV, G4cout, G4endl, G4Molecule::GetName(), G4DNAMolecularReactionData::GetNbProducts(), G4DNAMolecularReactionData::GetProduct(), G4VDNAReactionModel::GetReactionRadius(), G4DNAMolecularReactionData::GetReactionRate(), G4VDNAReactionModel::GetReactionTable(), G4VDNAReactionModel::InitialiseToPrint(), left, m3, mole, n, nanometer, s, G4VDNAReactionModel::SetReactionTable(), and TRUE.

Referenced by G4EmDNAChemistry::ConstructTimeStepModel().

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void G4DNAMolecularReactionTable::SetReaction	(	G4double	observedReactionRate,
		const G4Molecule *	reactive1,
		const G4Molecule *	reactive2
	)

Define a reaction : First argument : reaction rate Second argument : reactant 1 Third argument : reactant 2 Fourth argument : a std std::vector holding the molecular products if this last argument is NULL then it will be interpreted as a reaction giving no products.

Definition at line 271 of file G4DNAMolecularReactionTable.cc.

Referenced by G4EmDNAChemistry::ConstructReactionTable().

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void G4DNAMolecularReactionTable::SetReaction ( G4DNAMolecularReactionData * reactionData )

Definition at line 254 of file G4DNAMolecularReactionTable.cc.

References fReactionData, fReactionDataMV, fReactivesMV, G4DNAMolecularReactionData::GetReactive1(), and G4DNAMolecularReactionData::GetReactive2().

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Member Data Documentation

G4DNAMolecularReactionTable * G4DNAMolecularReactionTable::fInstance

staticprotected

Definition at line 133 of file G4DNAMolecularReactionTable.hh.

Referenced by DeleteInstance(), and GetReactionTable().

const G4MoleculeHandleManager* G4DNAMolecularReactionTable::fMoleculeHandleManager

protected

Definition at line 169 of file G4DNAMolecularReactionTable.hh.

ReactionDataMap G4DNAMolecularReactionTable::fReactionData

protected

Definition at line 181 of file G4DNAMolecularReactionTable.hh.

Referenced by GetReactionData(), GetReativesNData(), PrintTable(), SetReaction(), and ~G4DNAMolecularReactionTable().

ReactionDataMV G4DNAMolecularReactionTable::fReactionDataMV

protected

Definition at line 183 of file G4DNAMolecularReactionTable.hh.

Referenced by GetReactionData(), SetReaction(), and ~G4DNAMolecularReactionTable().

ReactivesMV G4DNAMolecularReactionTable::fReactivesMV

protected

Definition at line 182 of file G4DNAMolecularReactionTable.hh.

Referenced by CanReactWith(), PrintTable(), SetReaction(), and ~G4DNAMolecularReactionTable().

G4bool G4DNAMolecularReactionTable::fVerbose

protected

Definition at line 170 of file G4DNAMolecularReactionTable.hh.

Referenced by CanReactWith(), G4DNAMolecularReactionTable(), and GetReativesNData().

The documentation for this class was generated from the following files:

source/source/processes/electromagnetic/dna/utils/include/G4DNAMolecularReactionTable.hh
source/source/processes/electromagnetic/dna/utils/src/G4DNAMolecularReactionTable.cc

Public Member Functions

Static Public Member Functions

Protected Types

Protected Member Functions

Protected Attributes

Static Protected Attributes

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation