G4GMocrenIO Class Reference

#include <G4GMocrenIO.hh>

Collaboration diagram for G4GMocrenIO:

Public Member Functions
	G4GMocrenIO ()
	~G4GMocrenIO ()
void	initialize ()
void	setFileName (std::string &_filename)
void	setFileName (char *_filename)
std::string &	getFileName ()
bool	storeData (char *_filename)
bool	storeData ()
bool	storeData2 (char *_filename)
bool	storeData2 ()
bool	storeData3 (char *_filename)
bool	storeData3 ()
bool	storeData4 (char *_filename)
bool	storeData4 ()
bool	retrieveData (char *_filename)
bool	retrieveData ()
bool	retrieveData2 (char *_filename)
bool	retrieveData2 ()
bool	retrieveData3 (char *_filename)
bool	retrieveData3 ()
bool	retrieveData4 (char *_filename)
bool	retrieveData4 ()
std::string &	getID ()
void	setID ()
void	setID (std::string &_id)
std::string &	getVersion ()
void	setVersion (std::string &_version)
void	setLittleEndianInput (bool _little)
void	setLittleEndianOutput (bool _little)
std::string &	getComment ()
void	setComment (std::string &_comment)
void	setVoxelSpacing (float _spacing[3])
void	getVoxelSpacing (float _spacing[3])
int &	getNumberOfEvents ()
void	setNumberOfEvents (int &_numberOfEvents)
void	addOneEvent ()
void	setPointerToModalityData (unsigned int &_pointer)
unsigned int	getPointerToModalityData ()
void	addPointerToDoseDistData (unsigned int &_pointer)
unsigned int	getPointerToDoseDistData (int _elem=0)
void	setPointerToROIData (unsigned int &_pointer)
unsigned int	getPointerToROIData ()
void	setPointerToTrackData (unsigned int &_pointer)
unsigned int	getPointerToTrackData ()
void	getModalityImageSize (int _size[3])
void	setModalityImageSize (int _size[3])
void	getModalityImageVoxelSpacing (float _size[3])
void	setModalityImageVoxelSpacing (float _size[3])
void	setModalityImageScale (double &_scale)
double	getModalityImageScale ()
void	setModalityImage (short *_image)
short *	getModalityImage (int _z)
void	clearModalityImage ()
void	setModalityImageDensityMap (std::vector< float > &_map)
std::vector< float > &	getModalityImageDensityMap ()
void	setModalityImageMinMax (short _minmax[2])
void	getModalityImageMinMax (short _minmax[2])
short	getModalityImageMax ()
short	getModalityImageMin ()
void	setModalityCenterPosition (float _center[3])
void	getModalityCenterPosition (float _center[3])
std::string	getModalityImageUnit ()
void	setModalityImageUnit (std::string &_unit)
short	convertDensityToHU (float &_dens)
void	newDoseDist ()
int	getNumDoseDist ()
std::string	getDoseDistUnit (int _num=0)
void	setDoseDistUnit (std::string &_unit, int _num=0)
void	getDoseDistSize (int _size[3], int _num=0)
void	setDoseDistSize (int _size[3], int _num=0)
void	setDoseDistMinMax (short _minmax[2], int _num=0)
void	getDoseDistMinMax (short _minmax[2], int _num=0)
void	setDoseDistMinMax (double _minmax[2], int _num=0)
void	getDoseDistMinMax (double _minmax[2], int _num=0)
void	setDoseDistScale (double &_scale, int _num=0)
double	getDoseDistScale (int _num=0)
void	setShortDoseDist (short *_image, int _num=0)
void	getShortDoseDist (short *_data, int _z, int _num=0)
void	getShortDoseDistMinMax (short _minmax[2], int _num=0)
void	setDoseDist (double *_image, int _num=0)
double *	getDoseDist (int _z, int _num=0)
bool	addDoseDist (std::vector< double * > &_image, int _num=0)
void	getDoseDistCenterPosition (float _center[3], int _num=0)
void	setDoseDistCenterPosition (float _center[3], int _num=0)
std::string	getDoseDistName (int _num=0)
void	setDoseDistName (std::string _name, int _num=0)
void	copyDoseDist (std::vector< class GMocrenDataPrimitive< double > > &_dose)
bool	mergeDoseDist (std::vector< class GMocrenDataPrimitive< double > > &_dose)
void	clearDoseDistAll ()
void	newROI ()
int	getNumROI ()
double	getROIScale (int _num=0)
void	setROIScale (double &_scale, int _num=0)
short *	getROI (int _z, int _num=0)
void	setROI (short *_image, int _num=0)
void	getROISize (int _size[3], int _num=0)
void	setROISize (int _size[3], int _num=0)
void	getROICenterPosition (float _center[3], int _num=0)
void	setROICenterPosition (float _center[3], int _num=0)
void	getROIMinMax (short _minmax[2], int _num=0)
void	setROIMinMax (short _minmax[2], int _num=0)
void	clearROIAll ()
int	getNumTracks ()
int	getNumTracks4 ()
std::vector< float * > &	getTracks ()
void	getTrack (int _num, std::vector< float * > &_steps, std::vector< unsigned char * > &_color)
void	addTrack (float *_tracks)
void	setTracks (std::vector< float * > &_tracks)
std::vector< unsigned char * > &	getTrackColors ()
void	addTrackColor (unsigned char *_colors)
void	setTrackColors (std::vector< unsigned char * > &_trackColors)
void	copyTracks (std::vector< float * > &_tracks, std::vector< unsigned char * > &_colors)
void	mergeTracks (std::vector< float * > &_tracks, std::vector< unsigned char * > &_colors)
void	addTrack (std::vector< float * > &_steps, unsigned char _color[3])
void	notStoredTracks ()
void	translateTracks (std::vector< float > &_translateo)
void	clearTracks ()
int	getNumberOfDetectors ()
void	addDetector (std::string &_name, std::vector< float * > &_det, unsigned char _color[3])
void	getDetector (int _num, std::vector< float * > &_edges, std::vector< unsigned char * > &_color, std::string &_detectorName)
void	translateDetector (std::vector< float > &_translate)
void	clearDetector ()
void	setVerboseLevel (int _level)
template<typename T >
void	convertEndian (char *_val, T &_rval)

Public Attributes
bool	kTracksWillBeStored

Static Public Attributes
static std::string	kId
static std::string	kVersion = "2.0.0"
static std::string	kFileName = "dose.gdd"
static char	kLittleEndianInput = true
static char	kLittleEndianOutput = true
static std::string	kComment
static int	kNumberOfEvents = 0
static unsigned int	kPointerToModalityData = 0
static std::vector< unsigned int >	kPointerToDoseDistData
static unsigned int	kPointerToROIData = 0
static unsigned int	kPointerToTrackData = 0
static unsigned int	kPointerToDetectorData = 0
static float	kVoxelSpacing [3] = {0., 0., 0.}
static class GMocrenDataPrimitive< short >	kModality
static std::vector< float >	kModalityImageDensityMap
static std::string	kModalityUnit = "g/cm3 "
static std::vector< class GMocrenDataPrimitive< double > >	kDose
static std::string	kDoseUnit = "keV "
static std::vector< class GMocrenDataPrimitive< short > >	kRoi
static std::vector< float * >	kSteps
static std::vector< unsigned char * >	kStepColors
static std::vector< class GMocrenTrack >	kTracks
static std::vector< class GMocrenDetector >	kDetectors
static int	kVerbose = 0

Protected Member Functions
bool	isDoseEmpty ()
void	calcDoseDistScale ()
bool	isROIEmpty ()
template<typename Type >
void	convertEndian (char *, Type &)
template<typename T >
void	invertByteOrder (char *_val, T &_rval)

Private Member Functions
void	calcPointers4 ()
void	calcPointers3 ()
void	calcPointers2 ()

Detailed Description

Definition at line 166 of file G4GMocrenIO.hh.

Constructor & Destructor Documentation

G4GMocrenIO::G4GMocrenIO

(

)

Definition at line 402 of file G4GMocrenIO.cc.

G4GMocrenIO::~G4GMocrenIO

(

)

Definition at line 408 of file G4GMocrenIO.cc.

Member Function Documentation

void G4GMocrenIO::addDetector	(	std::string &	_name,
		std::vector< float * > &	_det,
		unsigned char	_color[3]
	)

Definition at line 3956 of file G4GMocrenIO.cc.

References GMocrenDetector::Edge::endPoint, kDetectors, GMocrenDetector::setColor(), GMocrenDetector::setDetector(), GMocrenDetector::setName(), and GMocrenDetector::Edge::startPoint.

Referenced by G4GMocrenFileSceneHandler::ExtractDetector(), and retrieveData4().

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bool G4GMocrenIO::addDoseDist	(	std::vector< double * > &	_image,
		int	_num = 0
	)

Definition at line 3641 of file G4GMocrenIO.cc.

References getDoseDistSize(), kDose, and z.

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void G4GMocrenIO::addOneEvent

(

)

Definition at line 3150 of file G4GMocrenIO.cc.

References kNumberOfEvents.

void G4GMocrenIO::addPointerToDoseDistData

(

unsigned int &

_pointer

)

Definition at line 3162 of file G4GMocrenIO.cc.

References kPointerToDoseDistData.

Referenced by calcPointers3(), calcPointers4(), retrieveData3(), and retrieveData4().

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void G4GMocrenIO::addTrack

(

float *

_tracks

)

Definition at line 3849 of file G4GMocrenIO.cc.

References kSteps.

Referenced by G4GMocrenFileSceneHandler::AddPrimitive(), G4GMocrenFileSceneHandler::EndSavingGdd(), mergeTracks(), retrieveData2(), retrieveData3(), and retrieveData4().

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void G4GMocrenIO::addTrack	(	std::vector< float * > &	_steps,
		unsigned char	_color[3]
	)

Definition at line 3899 of file G4GMocrenIO.cc.

References GMocrenTrack::Step::endPoint, kTracks, GMocrenTrack::setColor(), GMocrenTrack::setTrack(), and GMocrenTrack::Step::startPoint.

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void G4GMocrenIO::addTrackColor

(

unsigned char *

_colors

)

Definition at line 3858 of file G4GMocrenIO.cc.

References kStepColors.

Referenced by mergeTracks(), and retrieveData3().

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void G4GMocrenIO::calcDoseDistScale ( )

protected

Definition at line 3734 of file G4GMocrenIO.cc.

References DOSERANGE, and kDose.

Referenced by storeData2(), storeData3(), and storeData4().

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void G4GMocrenIO::calcPointers2 ( )

private

Definition at line 3318 of file G4GMocrenIO.cc.

References getDoseDistSize(), getModalityImageMinMax(), getModalityImageSize(), getNumTracks(), getROISize(), isROIEmpty(), kPointerToDoseDistData, setPointerToModalityData(), setPointerToROIData(), and setPointerToTrackData().

Referenced by storeData2().

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void G4GMocrenIO::calcPointers3 ( )

private

Definition at line 3263 of file G4GMocrenIO.cc.

References addPointerToDoseDistData(), getDoseDistSize(), getModalityImageMinMax(), getModalityImageSize(), getNumDoseDist(), getNumTracks(), getROISize(), isROIEmpty(), kPointerToDoseDistData, setPointerToModalityData(), setPointerToROIData(), and setPointerToTrackData().

Referenced by storeData3().

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void G4GMocrenIO::calcPointers4 ( )

private

Definition at line 3189 of file G4GMocrenIO.cc.

References addPointerToDoseDistData(), G4cout, G4endl, getDoseDistSize(), getModalityImageMinMax(), getModalityImageSize(), getNumDoseDist(), getROISize(), isROIEmpty(), kDetectors, kPointerToDetectorData, kPointerToDoseDistData, kPointerToTrackData, kTracks, kVerbose, setPointerToModalityData(), setPointerToROIData(), and setPointerToTrackData().

Referenced by storeData4().

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void G4GMocrenIO::clearDetector ( )

inline

Definition at line 451 of file G4GMocrenIO.hh.

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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void G4GMocrenIO::clearDoseDistAll

(

)

Definition at line 3713 of file G4GMocrenIO.cc.

References getNumDoseDist(), isDoseEmpty(), and kDose.

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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void G4GMocrenIO::clearModalityImage

(

)

Definition at line 3398 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::clearImage(), and kModality.

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void G4GMocrenIO::clearROIAll

(

)

Definition at line 3819 of file G4GMocrenIO.cc.

References getNumROI(), isROIEmpty(), and kRoi.

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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void G4GMocrenIO::clearTracks ( )

inline

Definition at line 439 of file G4GMocrenIO.hh.

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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short G4GMocrenIO::convertDensityToHU

(

float &

_dens

)

Definition at line 3453 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getMinMax(), kModality, and kModalityImageDensityMap.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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template<typename Type >

void G4GMocrenIO::convertEndian ( char *  , Type &    )

protected

Referenced by retrieveData2(), retrieveData3(), and retrieveData4().

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template<typename T >

void G4GMocrenIO::convertEndian	(	char *	_val,
		T &	_rval
	)

Definition at line 4017 of file G4GMocrenIO.cc.

References kLittleEndianInput, and kLittleEndianOutput.

void G4GMocrenIO::copyDoseDist

(

std::vector< class GMocrenDataPrimitive< double > > &

_dose

)

Definition at line 3683 of file G4GMocrenIO.cc.

References kDose.

void G4GMocrenIO::copyTracks	(	std::vector< float * > &	_tracks,
		std::vector< unsigned char * > &	_colors
	)

Definition at line 3867 of file G4GMocrenIO.cc.

References kStepColors, and kSteps.

std::string& G4GMocrenIO::getComment ( )

inline

Definition at line 274 of file G4GMocrenIO.hh.

References kComment.

void G4GMocrenIO::getDetector	(	int	_num,
		std::vector< float * > &	_edges,
		std::vector< unsigned char * > &	_color,
		std::string &	_detectorName
	)

Definition at line 3978 of file G4GMocrenIO.cc.

References G4VisManager::errors, FatalException, G4cout, G4endl, G4Exception(), G4VisManager::GetVerbosity(), and kDetectors.

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double * G4GMocrenIO::getDoseDist	(	int	_z,
		int	_num = 0
	)

Definition at line 3618 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

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void G4GMocrenIO::getDoseDistCenterPosition	(	float	_center[3],
		int	_num = 0
	)

Definition at line 3662 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

Referenced by storeData3(), and storeData4().

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void G4GMocrenIO::getDoseDistMinMax	(	short	_minmax[2],
		int	_num = 0
	)

Definition at line 3519 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

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void G4GMocrenIO::getDoseDistMinMax	(	double	_minmax[2],
		int	_num = 0
	)

Definition at line 3534 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

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std::string G4GMocrenIO::getDoseDistName

(

int

_num = 0

)

Definition at line 3674 of file G4GMocrenIO.cc.

References isDoseEmpty(), kDose, and name.

Referenced by storeData4().

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double G4GMocrenIO::getDoseDistScale

(

int

_num = 0

)

Definition at line 3547 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

Referenced by storeData3(), and storeData4().

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void G4GMocrenIO::getDoseDistSize	(	int	_size[3],
		int	_num = 0
	)

Definition at line 3499 of file G4GMocrenIO.cc.

References isDoseEmpty(), and kDose.

Referenced by addDoseDist(), calcPointers2(), calcPointers3(), and calcPointers4().

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std::string G4GMocrenIO::getDoseDistUnit

(

int

_num = 0

)

Definition at line 3483 of file G4GMocrenIO.cc.

References kDoseUnit.

std::string& G4GMocrenIO::getFileName ( )

inline

Definition at line 240 of file G4GMocrenIO.hh.

References kFileName.

std::string& G4GMocrenIO::getID ( )

inline

Definition at line 261 of file G4GMocrenIO.hh.

References kId.

void G4GMocrenIO::getModalityCenterPosition

(

float

_center[3]

)

Definition at line 3438 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getCenterPosition(), isROIEmpty(), and kModality.

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short * G4GMocrenIO::getModalityImage

(

int

_z

)

Definition at line 3394 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getImage(), and kModality.

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std::vector< float > & G4GMocrenIO::getModalityImageDensityMap

(

)

Definition at line 3406 of file G4GMocrenIO.cc.

References kModalityImageDensityMap.

short G4GMocrenIO::getModalityImageMax

(

)

Definition at line 3421 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getMinMax(), and kModality.

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short G4GMocrenIO::getModalityImageMin

(

)

Definition at line 3427 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getMinMax(), and kModality.

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void G4GMocrenIO::getModalityImageMinMax

(

short

_minmax[2]

)

Definition at line 3415 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getMinMax(), and kModality.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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double G4GMocrenIO::getModalityImageScale

(

)

Definition at line 3384 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getScale(), and kModality.

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void G4GMocrenIO::getModalityImageSize

(

int

_size[3]

)

Definition at line 3370 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::getSize(), and kModality.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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std::string G4GMocrenIO::getModalityImageUnit

(

)

Definition at line 3446 of file G4GMocrenIO.cc.

References kModalityUnit.

void G4GMocrenIO::getModalityImageVoxelSpacing

(

float

_size[3]

)

int G4GMocrenIO::getNumberOfDetectors

(

)

Definition at line 3953 of file G4GMocrenIO.cc.

References kDetectors.

int & G4GMocrenIO::getNumberOfEvents

(

)

Definition at line 3144 of file G4GMocrenIO.cc.

References kNumberOfEvents.

int G4GMocrenIO::getNumDoseDist

(

)

Definition at line 3478 of file G4GMocrenIO.cc.

References kDose.

Referenced by calcPointers3(), calcPointers4(), clearDoseDistAll(), storeData3(), and storeData4().

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int G4GMocrenIO::getNumROI

(

)

Definition at line 3754 of file G4GMocrenIO.cc.

References kRoi.

Referenced by clearROIAll().

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int G4GMocrenIO::getNumTracks

(

)

Definition at line 3843 of file G4GMocrenIO.cc.

References kSteps.

Referenced by calcPointers2(), and calcPointers3().

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int G4GMocrenIO::getNumTracks4

(

)

Definition at line 3846 of file G4GMocrenIO.cc.

References kTracks.

unsigned int G4GMocrenIO::getPointerToDoseDistData

(

int

_elem = 0

)

Definition at line 3165 of file G4GMocrenIO.cc.

References kPointerToDoseDistData.

unsigned int G4GMocrenIO::getPointerToModalityData

(

)

Definition at line 3158 of file G4GMocrenIO.cc.

References kPointerToModalityData.

unsigned int G4GMocrenIO::getPointerToROIData

(

)

Definition at line 3177 of file G4GMocrenIO.cc.

References kPointerToROIData.

unsigned int G4GMocrenIO::getPointerToTrackData

(

)

Definition at line 3184 of file G4GMocrenIO.cc.

References kPointerToTrackData.

short * G4GMocrenIO::getROI	(	int	_z,
		int	_num = 0
	)

Definition at line 3775 of file G4GMocrenIO.cc.

References isROIEmpty(), and kRoi.

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void G4GMocrenIO::getROICenterPosition	(	float	_center[3],
		int	_num = 0
	)

Definition at line 3811 of file G4GMocrenIO.cc.

References isROIEmpty(), and kRoi.

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void G4GMocrenIO::getROIMinMax	(	short	_minmax[2],
		int	_num = 0
	)

Definition at line 3799 of file G4GMocrenIO.cc.

References isROIEmpty(), and kRoi.

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double G4GMocrenIO::getROIScale

(

int

_num = 0

)

Definition at line 3763 of file G4GMocrenIO.cc.

References isROIEmpty(), and kRoi.

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void G4GMocrenIO::getROISize	(	int	_size[3],
		int	_num = 0
	)

Definition at line 3787 of file G4GMocrenIO.cc.

References isROIEmpty(), and kRoi.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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void G4GMocrenIO::getShortDoseDist	(	short *	_data,
		int	_z,
		int	_num = 0
	)

Definition at line 3583 of file G4GMocrenIO.cc.

References G4VisManager::errors, FatalException, G4cout, G4endl, G4Exception(), G4VisManager::GetVerbosity(), and kDose.

Referenced by storeData2(), storeData3(), and storeData4().

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void G4GMocrenIO::getShortDoseDistMinMax	(	short	_minmax[2],
		int	_num = 0
	)

Definition at line 3606 of file G4GMocrenIO.cc.

References kDose.

Referenced by storeData2(), storeData3(), and storeData4().

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void G4GMocrenIO::getTrack	(	int	_num,
		std::vector< float * > &	_steps,
		std::vector< unsigned char * > &	_color
	)

Definition at line 3917 of file G4GMocrenIO.cc.

References G4VisManager::errors, FatalException, G4cout, G4endl, G4Exception(), G4VisManager::GetVerbosity(), and kTracks.

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std::vector< unsigned char * > & G4GMocrenIO::getTrackColors

(

)

Definition at line 3864 of file G4GMocrenIO.cc.

References kStepColors.

std::vector< float * > & G4GMocrenIO::getTracks

(

)

Definition at line 3855 of file G4GMocrenIO.cc.

References kSteps.

std::string & G4GMocrenIO::getVersion

(

)

Definition at line 3128 of file G4GMocrenIO.cc.

References kVersion.

void G4GMocrenIO::getVoxelSpacing

(

float

_spacing[3]

)

Definition at line 3139 of file G4GMocrenIO.cc.

References kVoxelSpacing.

void G4GMocrenIO::initialize

(

)

Definition at line 413 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::clear(), kComment, kDose, kDoseUnit, kFileName, kId, kLittleEndianInput, kLittleEndianOutput, kModality, kModalityImageDensityMap, kModalityUnit, kNumberOfEvents, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kStepColors, kSteps, kTracksWillBeStored, kVerbose, kVersion, and kVoxelSpacing.

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template<typename T >

void G4GMocrenIO::invertByteOrder ( char *  _val, T &  _rval  )

protected

Definition at line 4035 of file G4GMocrenIO.cc.

Referenced by storeData4().

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bool G4GMocrenIO::isDoseEmpty ( )

protected

Definition at line 3723 of file G4GMocrenIO.cc.

References kDose.

Referenced by clearDoseDistAll(), getDoseDist(), getDoseDistCenterPosition(), getDoseDistMinMax(), getDoseDistName(), getDoseDistScale(), getDoseDistSize(), storeData2(), storeData3(), and storeData4().

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bool G4GMocrenIO::isROIEmpty ( )

protected

Definition at line 3829 of file G4GMocrenIO.cc.

References kRoi.

Referenced by calcPointers2(), calcPointers3(), calcPointers4(), clearROIAll(), getModalityCenterPosition(), getROI(), getROICenterPosition(), getROIMinMax(), getROIScale(), getROISize(), storeData2(), storeData3(), and storeData4().

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bool G4GMocrenIO::mergeDoseDist

(

std::vector< class GMocrenDataPrimitive< double > > &

_dose

)

Definition at line 3690 of file G4GMocrenIO.cc.

References G4VisManager::errors, G4cout, G4endl, G4VisManager::GetVerbosity(), kDose, and kVerbose.

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void G4GMocrenIO::mergeTracks	(	std::vector< float * > &	_tracks,
		std::vector< unsigned char * > &	_colors
	)

Definition at line 3887 of file G4GMocrenIO.cc.

References addTrack(), and addTrackColor().

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void G4GMocrenIO::newDoseDist

(

)

Definition at line 3474 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd(), retrieveData2(), retrieveData3(), and retrieveData4().

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void G4GMocrenIO::newROI

(

)

Definition at line 3750 of file G4GMocrenIO.cc.

References kRoi.

Referenced by retrieveData2(), retrieveData3(), and retrieveData4().

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void G4GMocrenIO::notStoredTracks ( )

inline

Definition at line 437 of file G4GMocrenIO.hh.

bool G4GMocrenIO::retrieveData

(

char *

_filename

)

Definition at line 1654 of file G4GMocrenIO.cc.

References kFileName, and retrieveData().

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bool G4GMocrenIO::retrieveData

(

)

Definition at line 1602 of file G4GMocrenIO.cc.

References G4VisManager::errors, FatalException, G4cout, G4endl, G4Exception(), G4VisManager::GetVerbosity(), kFileName, retrieveData2(), retrieveData3(), and retrieveData4().

Referenced by retrieveData(), retrieveData2(), retrieveData3(), and retrieveData4().

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bool G4GMocrenIO::retrieveData2

(

char *

_filename

)

Definition at line 3096 of file G4GMocrenIO.cc.

References kFileName, and retrieveData().

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bool G4GMocrenIO::retrieveData2

(

)

Definition at line 2631 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::addImage(), addTrack(), convertEndian(), DEBUG, G4VisManager::errors, G4cout, G4endl, G4VisManager::GetVerbosity(), IDLENGTH, kDose, kFileName, kId, kLittleEndianInput, kModality, kModalityImageDensityMap, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kSteps, kVerbose, kVersion, kVoxelSpacing, newDoseDist(), newROI(), GMocrenDataPrimitive< T >::setMinMax(), GMocrenDataPrimitive< T >::setScale(), GMocrenDataPrimitive< T >::setSize(), G4InuclParticleNames::tp, VERLENGTH, and z.

Referenced by retrieveData().

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bool G4GMocrenIO::retrieveData3

(

char *

_filename

)

Definition at line 2625 of file G4GMocrenIO.cc.

References kFileName, and retrieveData().

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bool G4GMocrenIO::retrieveData3

(

)

Definition at line 2193 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::addImage(), addPointerToDoseDistData(), addTrack(), addTrackColor(), convertEndian(), DEBUG, G4VisManager::errors, G4cout, G4endl, G4VisManager::GetVerbosity(), kComment, kDose, kDoseUnit, kFileName, kLittleEndianInput, kModality, kModalityImageDensityMap, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kVerbose, kVersion, kVoxelSpacing, newDoseDist(), newROI(), setComment(), setDoseDistUnit(), GMocrenDataPrimitive< T >::setMinMax(), setModalityImageUnit(), GMocrenDataPrimitive< T >::setScale(), GMocrenDataPrimitive< T >::setSize(), G4InuclParticleNames::tp, and z.

Referenced by retrieveData().

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bool G4GMocrenIO::retrieveData4

(

char *

_filename

)

Definition at line 2187 of file G4GMocrenIO.cc.

References kFileName, and retrieveData().

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bool G4GMocrenIO::retrieveData4

(

)

Definition at line 1660 of file G4GMocrenIO.cc.

References addDetector(), GMocrenDataPrimitive< T >::addImage(), addPointerToDoseDistData(), addTrack(), convertEndian(), DEBUG, G4VisManager::errors, G4cout, G4endl, G4VisManager::GetVerbosity(), kComment, kDose, kDoseUnit, kFileName, kLittleEndianInput, kModality, kModalityImageDensityMap, kPointerToDetectorData, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kVerbose, kVersion, kVoxelSpacing, newDoseDist(), newROI(), setComment(), setDoseDistName(), setDoseDistUnit(), GMocrenDataPrimitive< T >::setMinMax(), setModalityImageUnit(), GMocrenDataPrimitive< T >::setScale(), GMocrenDataPrimitive< T >::setSize(), and z.

Referenced by retrieveData().

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void G4GMocrenIO::setComment ( std::string &  _comment )

inline

Definition at line 275 of file G4GMocrenIO.hh.

Referenced by retrieveData3(), and retrieveData4().

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void G4GMocrenIO::setDoseDist	(	double *	_image,
		int	_num = 0
	)

Definition at line 3614 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setDoseDistCenterPosition	(	float	_center[3],
		int	_num = 0
	)

Definition at line 3658 of file G4GMocrenIO.cc.

References kDose.

void G4GMocrenIO::setDoseDistMinMax	(	short	_minmax[2],
		int	_num = 0
	)

Definition at line 3512 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setDoseDistMinMax	(	double	_minmax[2],
		int	_num = 0
	)

Definition at line 3530 of file G4GMocrenIO.cc.

References kDose.

void G4GMocrenIO::setDoseDistName	(	std::string	_name,
		int	_num = 0
	)

Definition at line 3670 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd(), and retrieveData4().

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void G4GMocrenIO::setDoseDistScale	(	double &	_scale,
		int	_num = 0
	)

Definition at line 3543 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setDoseDistSize	(	int	_size[3],
		int	_num = 0
	)

Definition at line 3505 of file G4GMocrenIO.cc.

References kDose.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setDoseDistUnit	(	std::string &	_unit,
		int	_num = 0
	)

Definition at line 3489 of file G4GMocrenIO.cc.

References kDoseUnit.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd(), retrieveData3(), and retrieveData4().

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void G4GMocrenIO::setFileName ( std::string &  _filename )

inline

Definition at line 237 of file G4GMocrenIO.hh.

void G4GMocrenIO::setFileName ( char *  _filename )

inline

Definition at line 238 of file G4GMocrenIO.hh.

void G4GMocrenIO::setID

(

)

Definition at line 3101 of file G4GMocrenIO.cc.

References kId, and G4InuclParticleNames::tm.

void G4GMocrenIO::setID ( std::string &  _id )

inline

Definition at line 263 of file G4GMocrenIO.hh.

void G4GMocrenIO::setLittleEndianInput

(

bool

_little

)

Definition at line 3132 of file G4GMocrenIO.cc.

References kLittleEndianInput.

void G4GMocrenIO::setLittleEndianOutput

(

bool

_little

)

Definition at line 3133 of file G4GMocrenIO.cc.

References kLittleEndianOutput.

void G4GMocrenIO::setModalityCenterPosition

(

float

_center[3]

)

Definition at line 3434 of file G4GMocrenIO.cc.

References kModality, and GMocrenDataPrimitive< T >::setCenterPosition().

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void G4GMocrenIO::setModalityImage

(

short *

_image

)

Definition at line 3390 of file G4GMocrenIO.cc.

References GMocrenDataPrimitive< T >::addImage(), and kModality.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setModalityImageDensityMap

(

std::vector< float > &

_map

)

Definition at line 3403 of file G4GMocrenIO.cc.

References kModalityImageDensityMap.

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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void G4GMocrenIO::setModalityImageMinMax

(

short

_minmax[2]

)

Definition at line 3410 of file G4GMocrenIO.cc.

References kModality, and GMocrenDataPrimitive< T >::setMinMax().

Referenced by G4GMocrenFileSceneHandler::BeginSavingGdd().

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void G4GMocrenIO::setModalityImageScale

(

double &

_scale

)

Definition at line 3380 of file G4GMocrenIO.cc.

References kModality, and GMocrenDataPrimitive< T >::setScale().

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void G4GMocrenIO::setModalityImageSize

(

int

_size[3]

)

Definition at line 3374 of file G4GMocrenIO.cc.

References kModality, and GMocrenDataPrimitive< T >::setSize().

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::setModalityImageUnit

(

std::string &

_unit

)

Definition at line 3449 of file G4GMocrenIO.cc.

References kModalityUnit.

Referenced by retrieveData3(), and retrieveData4().

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void G4GMocrenIO::setModalityImageVoxelSpacing

(

float

_size[3]

)

void G4GMocrenIO::setNumberOfEvents

(

int &

_numberOfEvents

)

Definition at line 3147 of file G4GMocrenIO.cc.

References kNumberOfEvents.

void G4GMocrenIO::setPointerToModalityData

(

unsigned int &

_pointer

)

Definition at line 3155 of file G4GMocrenIO.cc.

References kPointerToModalityData.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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void G4GMocrenIO::setPointerToROIData

(

unsigned int &

_pointer

)

Definition at line 3174 of file G4GMocrenIO.cc.

References kPointerToROIData.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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void G4GMocrenIO::setPointerToTrackData

(

unsigned int &

_pointer

)

Definition at line 3181 of file G4GMocrenIO.cc.

References kPointerToTrackData.

Referenced by calcPointers2(), calcPointers3(), and calcPointers4().

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void G4GMocrenIO::setROI	(	short *	_image,
		int	_num = 0
	)

Definition at line 3771 of file G4GMocrenIO.cc.

References kRoi.

void G4GMocrenIO::setROICenterPosition	(	float	_center[3],
		int	_num = 0
	)

Definition at line 3807 of file G4GMocrenIO.cc.

References kRoi.

void G4GMocrenIO::setROIMinMax	(	short	_minmax[2],
		int	_num = 0
	)

Definition at line 3795 of file G4GMocrenIO.cc.

References kRoi.

void G4GMocrenIO::setROIScale	(	double &	_scale,
		int	_num = 0
	)

Definition at line 3759 of file G4GMocrenIO.cc.

References kRoi.

void G4GMocrenIO::setROISize	(	int	_size[3],
		int	_num = 0
	)

Definition at line 3783 of file G4GMocrenIO.cc.

References kRoi.

void G4GMocrenIO::setShortDoseDist	(	short *	_image,
		int	_num = 0
	)

Definition at line 3564 of file G4GMocrenIO.cc.

References kDose.

void G4GMocrenIO::setTrackColors

(

std::vector< unsigned char * > &

_trackColors

)

Definition at line 3861 of file G4GMocrenIO.cc.

References kStepColors.

void G4GMocrenIO::setTracks

(

std::vector< float * > &

_tracks

)

Definition at line 3852 of file G4GMocrenIO.cc.

References kSteps.

void G4GMocrenIO::setVerboseLevel

(

int

_level

)

Definition at line 4053 of file G4GMocrenIO.cc.

References kVerbose.

void G4GMocrenIO::setVersion

(

std::string &

_version

)

Definition at line 3129 of file G4GMocrenIO.cc.

References kVersion.

void G4GMocrenIO::setVoxelSpacing

(

float

_spacing[3]

)

Definition at line 3136 of file G4GMocrenIO.cc.

References kVoxelSpacing.

Referenced by G4GMocrenFileSceneHandler::AddSolid().

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bool G4GMocrenIO::storeData

(

char *

_filename

)

Definition at line 458 of file G4GMocrenIO.cc.

References storeData4().

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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bool G4GMocrenIO::storeData

(

)

Definition at line 454 of file G4GMocrenIO.cc.

References storeData4().

Referenced by storeData2().

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bool G4GMocrenIO::storeData2

(

char *

_filename

)

Definition at line 1597 of file G4GMocrenIO.cc.

References kFileName, and storeData().

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bool G4GMocrenIO::storeData2

(

)

Definition at line 1339 of file G4GMocrenIO.cc.

References calcDoseDistScale(), calcPointers2(), DEBUG, G4cout, G4endl, GMocrenDataPrimitive< T >::getImage(), GMocrenDataPrimitive< T >::getMinMax(), GMocrenDataPrimitive< T >::getScale(), getShortDoseDist(), getShortDoseDistMinMax(), GMocrenDataPrimitive< T >::getSize(), IDLENGTH, isDoseEmpty(), isROIEmpty(), kDose, kFileName, kId, kLittleEndianOutput, kModality, kModalityImageDensityMap, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kSteps, kVerbose, kVersion, kVoxelSpacing, ofile, G4InuclParticleNames::tp, VERLENGTH, and z.

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bool G4GMocrenIO::storeData3

(

char *

_filename

)

bool G4GMocrenIO::storeData3

(

)

Definition at line 1040 of file G4GMocrenIO.cc.

References calcDoseDistScale(), calcPointers3(), DEBUG, G4VisManager::errors, G4cout, G4endl, getDoseDistCenterPosition(), getDoseDistScale(), GMocrenDataPrimitive< T >::getImage(), GMocrenDataPrimitive< T >::getMinMax(), getNumDoseDist(), GMocrenDataPrimitive< T >::getScale(), getShortDoseDist(), getShortDoseDistMinMax(), GMocrenDataPrimitive< T >::getSize(), G4VisManager::GetVerbosity(), isDoseEmpty(), isROIEmpty(), kComment, kDose, kDoseUnit, kFileName, kLittleEndianOutput, kModality, kModalityImageDensityMap, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kStepColors, kSteps, kVerbose, kVoxelSpacing, ofile, G4InuclParticleNames::tp, and z.

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bool G4GMocrenIO::storeData4

(

char *

_filename

)

Definition at line 1333 of file G4GMocrenIO.cc.

References kFileName, and storeData4().

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bool G4GMocrenIO::storeData4

(

)

Definition at line 462 of file G4GMocrenIO.cc.

References calcDoseDistScale(), calcPointers4(), DEBUG, G4cout, G4endl, getDoseDistCenterPosition(), getDoseDistName(), getDoseDistScale(), GMocrenDataPrimitive< T >::getImage(), GMocrenDataPrimitive< T >::getMinMax(), getNumDoseDist(), GMocrenDataPrimitive< T >::getScale(), getShortDoseDist(), getShortDoseDistMinMax(), GMocrenDataPrimitive< T >::getSize(), invertByteOrder(), isDoseEmpty(), isROIEmpty(), kComment, kDetectors, kDose, kDoseUnit, kFileName, kLittleEndianOutput, kModality, kModalityImageDensityMap, kPointerToDetectorData, kPointerToDoseDistData, kPointerToModalityData, kPointerToROIData, kPointerToTrackData, kRoi, kTracks, kTracksWillBeStored, kVerbose, kVoxelSpacing, name, ofile, and z.

Referenced by storeData(), and storeData4().

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void G4GMocrenIO::translateDetector

(

std::vector< float > &

_translate

)

Definition at line 4008 of file G4GMocrenIO.cc.

References kDetectors.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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void G4GMocrenIO::translateTracks

(

std::vector< float > &

_translateo

)

Definition at line 3942 of file G4GMocrenIO.cc.

References kTracks.

Referenced by G4GMocrenFileSceneHandler::EndSavingGdd().

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Member Data Documentation

std::string G4GMocrenIO::kComment

static

Definition at line 181 of file G4GMocrenIO.hh.

Referenced by getComment(), initialize(), retrieveData3(), retrieveData4(), storeData3(), and storeData4().

std::vector< class GMocrenDetector > G4GMocrenIO::kDetectors

static

Definition at line 222 of file G4GMocrenIO.hh.

Referenced by addDetector(), calcPointers4(), getDetector(), getNumberOfDetectors(), storeData4(), and translateDetector().

std::vector< class GMocrenDataPrimitive< double > > G4GMocrenIO::kDose

static

Definition at line 207 of file G4GMocrenIO.hh.

Referenced by addDoseDist(), calcDoseDistScale(), clearDoseDistAll(), copyDoseDist(), getDoseDist(), getDoseDistCenterPosition(), getDoseDistMinMax(), getDoseDistName(), getDoseDistScale(), getDoseDistSize(), getNumDoseDist(), getShortDoseDist(), getShortDoseDistMinMax(), initialize(), isDoseEmpty(), mergeDoseDist(), newDoseDist(), retrieveData2(), retrieveData3(), retrieveData4(), setDoseDist(), setDoseDistCenterPosition(), setDoseDistMinMax(), setDoseDistName(), setDoseDistScale(), setDoseDistSize(), setShortDoseDist(), storeData2(), storeData3(), and storeData4().

std::string G4GMocrenIO::kDoseUnit = "keV "

static

Definition at line 209 of file G4GMocrenIO.hh.

Referenced by getDoseDistUnit(), initialize(), retrieveData3(), retrieveData4(), setDoseDistUnit(), storeData3(), and storeData4().

std::string G4GMocrenIO::kFileName = "dose.gdd"

static

Definition at line 175 of file G4GMocrenIO.hh.

Referenced by getFileName(), initialize(), retrieveData(), retrieveData2(), retrieveData3(), retrieveData4(), storeData2(), storeData3(), and storeData4().

std::string G4GMocrenIO::kId

static

Definition at line 169 of file G4GMocrenIO.hh.

Referenced by getID(), initialize(), retrieveData2(), setID(), and storeData2().

char G4GMocrenIO::kLittleEndianInput = true

static

Definition at line 178 of file G4GMocrenIO.hh.

Referenced by convertEndian(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), and setLittleEndianInput().

char G4GMocrenIO::kLittleEndianOutput = true

static

Definition at line 179 of file G4GMocrenIO.hh.

Referenced by convertEndian(), initialize(), setLittleEndianOutput(), storeData2(), storeData3(), and storeData4().

class GMocrenDataPrimitive< short > G4GMocrenIO::kModality

static

Definition at line 201 of file G4GMocrenIO.hh.

Referenced by clearModalityImage(), convertDensityToHU(), getModalityCenterPosition(), getModalityImage(), getModalityImageMax(), getModalityImageMin(), getModalityImageMinMax(), getModalityImageScale(), getModalityImageSize(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setModalityCenterPosition(), setModalityImage(), setModalityImageMinMax(), setModalityImageScale(), setModalityImageSize(), storeData2(), storeData3(), and storeData4().

std::vector< float > G4GMocrenIO::kModalityImageDensityMap

static

Definition at line 203 of file G4GMocrenIO.hh.

Referenced by convertDensityToHU(), getModalityImageDensityMap(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setModalityImageDensityMap(), storeData2(), storeData3(), and storeData4().

std::string G4GMocrenIO::kModalityUnit = "g/cm3 "

static

Definition at line 204 of file G4GMocrenIO.hh.

Referenced by getModalityImageUnit(), initialize(), and setModalityImageUnit().

int G4GMocrenIO::kNumberOfEvents = 0

static

Definition at line 184 of file G4GMocrenIO.hh.

Referenced by addOneEvent(), getNumberOfEvents(), initialize(), and setNumberOfEvents().

unsigned int G4GMocrenIO::kPointerToDetectorData = 0

static

Definition at line 195 of file G4GMocrenIO.hh.

Referenced by calcPointers4(), retrieveData4(), and storeData4().

std::vector< unsigned int > G4GMocrenIO::kPointerToDoseDistData

static

Definition at line 189 of file G4GMocrenIO.hh.

Referenced by addPointerToDoseDistData(), calcPointers2(), calcPointers3(), calcPointers4(), getPointerToDoseDistData(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), storeData2(), storeData3(), and storeData4().

unsigned int G4GMocrenIO::kPointerToModalityData = 0

static

Definition at line 187 of file G4GMocrenIO.hh.

Referenced by getPointerToModalityData(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setPointerToModalityData(), storeData2(), storeData3(), and storeData4().

unsigned int G4GMocrenIO::kPointerToROIData = 0

static

Definition at line 191 of file G4GMocrenIO.hh.

Referenced by getPointerToROIData(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setPointerToROIData(), storeData2(), storeData3(), and storeData4().

unsigned int G4GMocrenIO::kPointerToTrackData = 0

static

Definition at line 193 of file G4GMocrenIO.hh.

Referenced by calcPointers4(), getPointerToTrackData(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setPointerToTrackData(), storeData2(), storeData3(), and storeData4().

std::vector< class GMocrenDataPrimitive< short > > G4GMocrenIO::kRoi

static

Definition at line 212 of file G4GMocrenIO.hh.

Referenced by clearROIAll(), getNumROI(), getROI(), getROICenterPosition(), getROIMinMax(), getROIScale(), getROISize(), initialize(), isROIEmpty(), newROI(), retrieveData2(), retrieveData3(), retrieveData4(), setROI(), setROICenterPosition(), setROIMinMax(), setROIScale(), setROISize(), storeData2(), storeData3(), and storeData4().

std::vector< unsigned char * > G4GMocrenIO::kStepColors

static

Definition at line 216 of file G4GMocrenIO.hh.

Referenced by addTrackColor(), copyTracks(), getTrackColors(), initialize(), setTrackColors(), and storeData3().

std::vector< float * > G4GMocrenIO::kSteps

static

Definition at line 215 of file G4GMocrenIO.hh.

Referenced by addTrack(), copyTracks(), getNumTracks(), getTracks(), initialize(), retrieveData2(), setTracks(), storeData2(), and storeData3().

std::vector< class GMocrenTrack > G4GMocrenIO::kTracks

static

Definition at line 218 of file G4GMocrenIO.hh.

Referenced by addTrack(), calcPointers4(), getNumTracks4(), getTrack(), storeData4(), and translateTracks().

bool G4GMocrenIO::kTracksWillBeStored

Definition at line 219 of file G4GMocrenIO.hh.

Referenced by initialize(), and storeData4().

int G4GMocrenIO::kVerbose = 0

static

Definition at line 225 of file G4GMocrenIO.hh.

Referenced by calcPointers4(), initialize(), mergeDoseDist(), retrieveData2(), retrieveData3(), retrieveData4(), setVerboseLevel(), storeData2(), storeData3(), and storeData4().

std::string G4GMocrenIO::kVersion = "2.0.0"

static

Definition at line 172 of file G4GMocrenIO.hh.

Referenced by getVersion(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setVersion(), and storeData2().

float G4GMocrenIO::kVoxelSpacing = {0., 0., 0.}

static

Definition at line 198 of file G4GMocrenIO.hh.

Referenced by getVoxelSpacing(), initialize(), retrieveData2(), retrieveData3(), retrieveData4(), setVoxelSpacing(), storeData2(), storeData3(), and storeData4().

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The documentation for this class was generated from the following files:

• source/source/visualization/gMocren/include/G4GMocrenIO.hh
• source/source/visualization/gMocren/src/G4GMocrenIO.cc