G4AugerData.cc

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//
// $Id: G4AugerData.cc v1.0
// 
//
// Author: Alfonso Mmantero (Alfonso.Mantero@ge.infn.it)
//
// History:
// -----------
// Based on G4FluoData by Elena Guardincerri
// 
// Modified: 30.07.02 VI Add select active Z + clean up against pedantic compiler
//
// -------------------------------------------------------------------

#include <fstream>
#include <sstream>

#include "G4AugerData.hh"
#include "G4SystemOfUnits.hh"
#include "G4DataVector.hh"
#include "G4Material.hh"
#include "G4Element.hh"
#include "G4ElementVector.hh"

G4AugerData::G4AugerData()
{

  G4int n = 0;
  G4int pos = 0;

    for (pos = 0 ; pos < 100; pos++) 
      {
        numberOfVacancies.push_back(n);
      }

  BuildAugerTransitionTable(); 


}

G4AugerData::~G4AugerData()
{ 
  /*
  std::map<G4int,std::vector<G4AugerTransition>,std::less<G4int> >::iterator pos;

  for (pos = augerTransitionTable.begin(); pos != augerTransitionTable.end(); pos++)
    {
      std::vector<G4AugerTransition> dataSet = (*pos).second;
      delete dataSet;
    }
  for (pos = energyMap.begin(); pos != energyMap.end(); pos++)
    {
      std::map<G4Int,G4DataVector*,std::less<G4int>>* dataMap = (*pos).second;
      for (pos2 = newIdProbabilityMap.begin(); pos2 != idMap.end(); pos2++)
        {
          G4DataVector* dataSet = (*pos2).second;
          delete dataSet;
        }
    }
  for (pos = probabilityMap.begin(); pos != probabilityMap.end(); pos++)
    {
      std::map<G4Int,G4DataVector*,std::less<G4int>>* dataMap = (*pos).second;
      for (pos2 = newIdProbabilityMap.begin(); pos2 != idMap.end(); pos2++)
        {
          G4DataVector* dataSet = (*pos2).second;
          delete dataSet;
        }
    }
  for (pos2 = newIdMap.begin(); pos2 != idMap.end(); pos2++)
    {
      G4DataVector* dataSet = (*pos2).second;
      delete dataSet;
    }
  for (pos2 = newIdEnergyMap.begin(); pos2 != idMap.end(); pos2++)
    {
      G4DataVector* dataSet = (*pos2).second;
      delete dataSet;
    }
  for (pos2 = newIdProbabilityMap.begin(); pos2 != idMap.end(); pos2++)
    {
      G4DataVector* dataSet = (*pos2).second;
      delete dataSet;
    }
  */

}

size_t G4AugerData::NumberOfVacancies(G4int Z) const
{
  return numberOfVacancies[Z];
}

G4int G4AugerData::VacancyId(G4int Z, G4int vacancyIndex) const
{

  G4int n = 0;
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = (G4int) dataSet[vacancyIndex].FinalShellId();
  }
  
  return n;
}


// Attention: this method wants the vacancy index, not the Id

size_t G4AugerData::NumberOfTransitions(G4int Z, G4int vacancyIndex) const
{
  G4int n = 0;
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", JustWarning, "Energy deposited locally");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) 
      {
        G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
        return 0;
      }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = (G4int)dataSet[vacancyIndex].TransitionOriginatingShellIds()->size();
  }
 return  n;
}



size_t G4AugerData::NumberOfAuger(G4int Z, G4int initIndex, G4int vacancyId) const
{
  size_t n = 0;
  if (initIndex<0 || initIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    const std::vector<G4int>* temp =  dataSet[initIndex].AugerOriginatingShellIds(vacancyId);
    n = temp->size();
  }
  return n;
}

size_t G4AugerData::AugerShellId(G4int Z, G4int vacancyIndex, G4int transId, G4int augerIndex) const
{
  size_t n = 0;  
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = dataSet[vacancyIndex].AugerOriginatingShellId(augerIndex,transId);
  }
  return n;
}

G4int G4AugerData::StartShellId(G4int Z, G4int vacancyIndex, G4int transitionShellIndex) const
{
  G4int n = 0; 

   if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z]) 
     {
       G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
       return 0;
     }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0; 
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    n = dataSet[vacancyIndex].TransitionOriginatingShellId(transitionShellIndex);
  }
   
 
 return n;
}

G4double G4AugerData::StartShellEnergy(G4int Z, G4int vacancyIndex, G4int transitionId, G4int augerIndex) const
{
  G4double energy = 0;
  
  if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z])
    {
      G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
      return 0;
    }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    energy = dataSet[vacancyIndex].AugerTransitionEnergy(augerIndex,transitionId);
      
  }
  return energy;
}


G4double G4AugerData::StartShellProb(G4int Z, G4int vacancyIndex,G4int transitionId,G4int augerIndex) const
{
  G4double prob = 0;
    
    if (vacancyIndex<0 || vacancyIndex>=numberOfVacancies[Z]) 
      {
        G4Exception("G4AugerData::VacancyId()","de0002", FatalErrorInArgument,"");
        return 0;
      }
  else {
    trans_Table::const_iterator element = augerTransitionTable.find(Z);
    if (element == augerTransitionTable.end()) {
      G4Exception("G4AugerData::VacancyId()","de0004", FatalErrorInArgument,  "Check element");
      return 0;
    }
    std::vector<G4AugerTransition> dataSet = (*element).second;
    prob = dataSet[vacancyIndex].AugerTransitionProbability(augerIndex, transitionId);



  }
     return prob;
}

std::vector<G4AugerTransition> G4AugerData::LoadData(G4int Z)
{ 
  // Build the complete string identifying the file with the data set

    std::ostringstream ost;
    if(Z != 0){
      ost << "au-tr-pr-"<< Z << ".dat";
    }
    else{
      ost << "au-tr-pr-"<<".dat"; 
    }
    G4String name(ost.str());
  
    char* path = getenv("G4LEDATA");
    if (!path)
      { 
        G4String excep = "G4AugerData::LoadData";
        G4Exception(excep,"em0006", FatalException,"" );
        std::vector<G4AugerTransition> a;
        return a;
      }
  
    G4String pathString(path);
    G4String dirFile = pathString + "/auger/" + name;
    std::ifstream file(dirFile);
    std::filebuf* lsdp = file.rdbuf();
  
    if (! (lsdp->is_open()) )
      {
        G4String excep = "G4AugerData::LoadData";
        G4String msg = "Missing" + dirFile;
        G4Exception(excep,"em0003", FatalException, msg);
      }
 

    G4double a = 0;
    G4int k = 1;
    G4int sLocal = 0;
  
    G4int vacId = 0;
    std::vector<G4int>* initIds = new std::vector<G4int>;
    std::vector<G4int>* newIds = new std::vector<G4int>;
    G4DataVector* transEnergies = new G4DataVector;
    G4DataVector* transProbabilities = new G4DataVector;
    std::vector<G4AugerTransition> augerTransitionVector;
    std::map<G4int,std::vector<G4int>,std::less<G4int> >* newIdMap = 
      new std::map<G4int,std::vector<G4int>,std::less<G4int> >;
    std::map<G4int,G4DataVector,std::less<G4int> >* newEnergyMap =
      new std::map<G4int,G4DataVector,std::less<G4int> >;
    std::map<G4int,G4DataVector,std::less<G4int> >* newProbabilityMap = 
      new std::map<G4int,G4DataVector,std::less<G4int> >;

  
    do {
      file >> a;


      G4int nColumns = 4;

      if (a == -1)
        {



          if (sLocal == 0)
            {
              // End of a shell data set
            
            
            
              std::vector<G4int>::iterator vectorIndex = initIds->begin();

              vacId = *vectorIndex;
            
              //initIds->erase(vectorIndex);
            


              std::vector<G4int> identifiers;
              for (vectorIndex = initIds->begin()+1 ; vectorIndex != initIds->end(); ++vectorIndex){

                identifiers.push_back(*vectorIndex);
              }

              vectorIndex = (initIds->end())-1;

              G4int augerShellId = *(vectorIndex);
            
            
              (*newIdMap)[augerShellId] = *newIds;
              (*newEnergyMap)[augerShellId] = *transEnergies;
              (*newProbabilityMap)[augerShellId] = *transProbabilities;

              augerTransitionVector.push_back(G4AugerTransition(vacId, identifiers, newIdMap, newEnergyMap, newProbabilityMap));

              // Now deleting all the variables I used, and creating new ones for the next shell

              delete newIdMap;
              delete newEnergyMap;
              delete newProbabilityMap;
            
              G4int n = initIds->size();            
              nInitShells.push_back(n);
              numberOfVacancies[Z]++;
              delete initIds;
              delete newIds;
              delete transEnergies;         
              delete transProbabilities;
              initIds = new std::vector<G4int>;
              newIds = new std::vector<G4int>;
              transEnergies = new G4DataVector;
              transProbabilities = new G4DataVector;
              newIdMap = new std::map<G4int,std::vector<G4int>,std::less<G4int> >;
              newEnergyMap = new std::map<G4int,G4DataVector,std::less<G4int> >;
              newProbabilityMap = new std::map<G4int,G4DataVector,std::less<G4int> >;   
            


            }      
          sLocal++;
          if (sLocal == nColumns)
            {
              sLocal = 0;
            }
        }
      // moved to the end in order to avoid leaks
      /*
      else if (a == -2)
        {
          // End of file; delete the empty vectors created 
          //when encountering the last -1 -1 row
          delete initIds;
          delete newIds;
          delete transEnergies;
          delete transProbabilities;
          delete newIdMap ;
          delete newEnergyMap;
          delete newProbabilityMap;     
          }*/ 
      else
        {
        
          if (k%nColumns == 3){
            // 3rd column is the transition probabilities
            transProbabilities->push_back(a);

            k++;}
          else if(k%nColumns == 2){      
            // 2nd column is new auger vacancy

            // 2nd column is new auger vacancy

            G4int l = (G4int)a;
            newIds->push_back(l);


            k++;
          }
          else if (k%nColumns == 1)
            {
              // 1st column is shell id
            
              if(initIds->size() == 0) {
              
                // if this is the first data of the shell, all the colums are equal 
                // to the shell Id; so we skip the next colums ang go to the next row
              
                initIds->push_back((G4int)a);
                // first line of initIds is the original shell of the vacancy
                file >> a;
                file >> a;
                file >> a;
                k = k+3;
              }
              else {

                //            std::vector<G4int>::iterator vectorIndex = (initIds->end())-1;
                if((G4int)a != initIds->back()){


                  if((initIds->size()) == 1) { 
                    initIds->push_back((G4int)a);
                  }  
                  else {


                    G4int augerShellId = 0;
                    augerShellId = initIds->back();
                  
                    (*newIdMap)[augerShellId] = *newIds;
                    (*newEnergyMap)[augerShellId] = *transEnergies;
                    (*newProbabilityMap)[augerShellId] = *transProbabilities;
                    delete newIds;
                    delete transEnergies;
                    delete transProbabilities;
                    newIds = new std::vector<G4int>;
                    transEnergies = new G4DataVector;
                    transProbabilities = new G4DataVector;
                    initIds->push_back((G4int)a);
                  }
                }
              }
            
              k++;    
           
            }
          else if (k%nColumns == 0)

            {//fourth column is transition energies
              G4double e = a * MeV; 
  
              transEnergies->push_back(e);
              k=1;

            }
        }
    }


    while (a != -2); // end of file
    file.close();
    delete initIds;
    delete newIds;
    delete transEnergies;
    delete transProbabilities;
    delete newIdMap ;
    delete newEnergyMap;
    delete newProbabilityMap;
    return augerTransitionVector;

}

void G4AugerData::BuildAugerTransitionTable()
{

  //  trans_Table::iterator pos = augerTransitionTable.begin();

  const G4MaterialTable* materialTable = G4Material::GetMaterialTable();

  G4int nMaterials = G4Material::GetNumberOfMaterials();

  G4DataVector activeZ;
  activeZ.clear();
  
  for (G4int mLocal=0; mLocal<nMaterials; mLocal++) {

    const G4Material* material= (*materialTable)[mLocal];        
    const G4ElementVector* elementVector = material->GetElementVector();
    const size_t nElements = material->GetNumberOfElements();
      
    for (size_t iEl=0; iEl<nElements; iEl++) {
      G4Element* element = (*elementVector)[iEl];
      G4double Z = element->GetZ();
      if (!(activeZ.contains(Z))) {
        activeZ.push_back(Z);
      }
    }
  }


  for (G4int element = 6; element < 100; element++)
    { 
      //      if(nMaterials == 0 || activeZ.contains(element)) {
      augerTransitionTable.insert(trans_Table::value_type(element,LoadData(element)));
      //        G4cout << "G4AugerData for Element no. " << element << " are loaded" << G4endl;
      // G4cout << "G4AugerData for Element no. " << element << " are loaded" << G4endl;
      //G4cout << "AugerTransitionTable complete"<< G4endl;
    }
}

void G4AugerData::PrintData(G4int Z) 
{
  
  for (G4int i = 0; i < numberOfVacancies[Z]; i++)
    {
      G4cout << "---- TransitionData for the vacancy nb "
             <<i
             <<" of the atomic number elemnt " 
             << Z
             <<"----- "
             <<G4endl;
      
      for (size_t k = 0; k<=NumberOfTransitions(Z,i); k++)
        { 
          G4int id = StartShellId(Z,i,k);
          
          for (size_t a = 0; a <= NumberOfAuger(Z,i,id); a++) {
            
            G4double e = StartShellEnergy(Z,i,id,a)/MeV;
            G4double p = StartShellProb(Z,i,id,a);
            G4int augerId = AugerShellId(Z, i, id, a);
            G4cout << k <<") Shell id: " << id <<G4endl;
            G4cout << "    Auger Originatig Shell Id :"<< augerId <<G4endl;
            G4cout << " - Transition energy = " << e << " MeV "<<G4endl;
            G4cout   << " - Transition probability = " << p <<G4endl;
          }
        }
      G4cout << "-------------------------------------------------" 
             << G4endl;
    }
}
G4AugerTransition* G4AugerData::GetAugerTransition(G4int Z,G4int vacancyShellIndex)
    {
      std::vector<G4AugerTransition>* dataSet = &augerTransitionTable[Z];
      std::vector<G4AugerTransition>::iterator vectorIndex = dataSet->begin() + vacancyShellIndex;

      G4AugerTransition* augerTransition = &(*vectorIndex);
      return augerTransition;
    }
  
std::vector<G4AugerTransition>* G4AugerData::GetAugerTransitions(G4int Z)
  {
    std::vector<G4AugerTransition>* dataSet = &augerTransitionTable[Z];
    return dataSet;
  }