G4RDShellData.cc

Go to the documentation of this file.

//
// ********************************************************************
// * License and Disclaimer                                           *
// *                                                                  *
// * The  Geant4 software  is  copyright of the Copyright Holders  of *
// * the Geant4 Collaboration.  It is provided  under  the terms  and *
// * conditions of the Geant4 Software License,  included in the file *
// * LICENSE and available at  http://cern.ch/geant4/license .  These *
// * include a list of copyright holders.                             *
// *                                                                  *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work  make  any representation or  warranty, express or implied, *
// * regarding  this  software system or assume any liability for its *
// * use.  Please see the license in the file  LICENSE  and URL above *
// * for the full disclaimer and the limitation of liability.         *
// *                                                                  *
// * This  code  implementation is the result of  the  scientific and *
// * technical work of the GEANT4 collaboration.                      *
// * By using,  copying,  modifying or  distributing the software (or *
// * any work based  on the software)  you  agree  to acknowledge its *
// * use  in  resulting  scientific  publications,  and indicate your *
// * acceptance of all terms of the Geant4 Software license.          *
// ********************************************************************
//
//
// $Id$
// GEANT4 tag $Name:  $
//
// Author: Maria Grazia Pia (Maria.Grazia.Pia@cern.ch)
//
// History:
// -----------
// 31 Jul 2001   MGP        Created
//
// -------------------------------------------------------------------

#include "G4RDShellData.hh"
#include "G4DataVector.hh"
#include "G4SystemOfUnits.hh"
#include <fstream>
#include <sstream>
#include <numeric>
#include <algorithm>
#include <valarray>
#include <functional>
#include "Randomize.hh"

// The following deprecated header is included because <functional> seems not to be found on MGP's laptop
//#include "function.h"

// Constructor

G4RDShellData::G4RDShellData(G4int minZ, G4int maxZ, G4bool isOccupancy)
  : zMin(minZ), zMax(maxZ), occupancyData(isOccupancy)
{  }

// Destructor
G4RDShellData::~G4RDShellData()
{
  std::map<G4int,std::vector<G4double>*,std::less<G4int> >::iterator pos;
  for (pos = idMap.begin(); pos != idMap.end(); ++pos)
    {
      std::vector<G4double>* dataSet = (*pos).second;
      delete dataSet;
    }

  std::map<G4int,G4DataVector*,std::less<G4int> >::iterator pos2;
  for (pos2 = bindingMap.begin(); pos2 != bindingMap.end(); ++pos2)
    {
      G4DataVector* dataSet = (*pos2).second;
      delete dataSet;
    }

  if (occupancyData)
    {
      std::map<G4int,std::vector<G4double>*,std::less<G4int> >::iterator pos3;
      for (pos3 = occupancyPdfMap.begin(); pos3 != occupancyPdfMap.end(); ++pos3)
        {
          std::vector<G4double>* dataSet = (*pos3).second;
          delete dataSet;
        }
    }
}


size_t G4RDShellData::NumberOfShells(G4int Z) const
{
  G4int z = Z - 1;
  G4int n = 0;

  if (Z>= zMin && Z <= zMax)
    {
      n = nShells[z];
    }
  return n;
}


const std::vector<G4double>& G4RDShellData::ShellIdVector(G4int Z) const
{
  std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator pos;
  if (Z < zMin || Z > zMax)
    G4Exception("G4RDShellData::ShellIdVector()", "OutOfRange",
                FatalException, "Z outside boundaries!");
  pos = idMap.find(Z);
  std::vector<G4double>* dataSet = (*pos).second;
  return *dataSet;
}


const std::vector<G4double>& G4RDShellData::ShellVector(G4int Z) const
{
  std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator pos;
  if (Z < zMin || Z > zMax)
    G4Exception("G4RDShellData::ShellVector()", "OutOfRange",
                FatalException, "Z outside boundaries!");
  pos = occupancyPdfMap.find(Z);
  std::vector<G4double>* dataSet = (*pos).second;
  return *dataSet;
}


G4int G4RDShellData::ShellId(G4int Z, G4int shellIndex) const
{
  G4int n = -1;

  if (Z >= zMin && Z <= zMax)
    {
      std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator pos;
      pos = idMap.find(Z);
      if (pos!= idMap.end())
        {
          std::vector<G4double> dataSet = *((*pos).second);
          G4int nData = dataSet.size();
          if (shellIndex >= 0 && shellIndex < nData)
            {
              n = (G4int) dataSet[shellIndex];
            }
        }
    }
  return n;
}


G4double G4RDShellData::ShellOccupancyProbability(G4int Z, G4int shellIndex) const
{
  G4double prob = -1.;

  if (Z >= zMin && Z <= zMax)
    {
      std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator pos;
      pos = idMap.find(Z);
      if (pos!= idMap.end())
        {
          std::vector<G4double> dataSet = *((*pos).second);
          G4int nData = dataSet.size();
          if (shellIndex >= 0 && shellIndex < nData)
            {
              prob = dataSet[shellIndex];
            }
        }
    }
  return prob;
}



G4double G4RDShellData::BindingEnergy(G4int Z, G4int shellIndex)  const
{
  G4double value = 0.;

  if (Z >= zMin && Z <= zMax)
    {
      std::map<G4int,G4DataVector*,std::less<G4int> >::const_iterator pos;
      pos = bindingMap.find(Z);
      if (pos!= bindingMap.end())
        {
          G4DataVector dataSet = *((*pos).second);
          G4int nData = dataSet.size();
          if (shellIndex >= 0 && shellIndex < nData)
            {
              value = dataSet[shellIndex];
            }
        }
    }
  return value;
}

void G4RDShellData::PrintData() const
{
  for (G4int Z = zMin; Z <= zMax; Z++)
    {
      G4cout << "---- Shell data for Z = "
             << Z
             << " ---- "
             << G4endl;
      G4int nSh = nShells[Z-1];
      std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator posId;
      posId = idMap.find(Z);
      std::vector<G4double>* ids = (*posId).second;
      std::map<G4int,G4DataVector*,std::less<G4int> >::const_iterator posE;
      posE = bindingMap.find(Z);
      G4DataVector* energies = (*posE).second;
      for (G4int i=0; i<nSh; i++)
        {
          G4int id = (G4int) (*ids)[i];
          G4double e = (*energies)[i] / keV;
          G4cout << i << ") ";

          if (occupancyData) 
            {
              G4cout << " Occupancy: ";
            }
          else 
            {
              G4cout << " Shell id: ";
            }
          G4cout << id << " - Binding energy = "
                 << e << " keV ";
            if (occupancyData)
              {
                std::map<G4int,std::vector<G4double>*,std::less<G4int> >::const_iterator posOcc;
                posOcc = occupancyPdfMap.find(Z);
                std::vector<G4double> probs = *((*posOcc).second);
                G4double prob = probs[i];
                G4cout << "- Probability = " << prob;
              }
            G4cout << G4endl;
        }
      G4cout << "-------------------------------------------------" 
             << G4endl;
    }
}


void G4RDShellData::LoadData(const G4String& fileName)
{ 
  // Build the complete string identifying the file with the data set
  
  std::ostringstream ost;
  
  ost << fileName << ".dat";
  
  G4String name(ost.str());
  
  char* path = getenv("G4LEDATA");
  if (!path)
    { 
      G4String excep("G4LEDATA environment variable not set!");
      G4Exception("G4RDShellData::LoadData()", "InvalidSetup",
                  FatalException, excep);
    }
  
  G4String pathString(path);
  G4String dirFile = pathString + name;
  std::ifstream file(dirFile);
  std::filebuf* lsdp = file.rdbuf();

  if (! (lsdp->is_open()) )
    {
      G4String s1("Data file: ");
      G4String s2(" not found");
      G4String excep = s1 + dirFile + s2;
      G4Exception("G4RDShellData::LoadData()", "DataNotFound",
                  FatalException, excep);
    }

  G4double a = 0;
  G4int k = 1;
  G4int s = 0;
  
  G4int Z = 1;
  G4DataVector* energies = new G4DataVector;
  std::vector<G4double>* ids = new std::vector<G4double>;

  do {
    file >> a;
    G4int nColumns = 2;
    if (a == -1)
      {
        if (s == 0)
          {
            // End of a shell data set
            idMap[Z] = ids;
            bindingMap[Z] = energies;
            G4int n = ids->size();
            nShells.push_back(n);
            // Start of new shell data set
            ids = new std::vector<G4double>;
            energies = new G4DataVector;
            Z++;            
          }      
        s++;
        if (s == nColumns)
        {
          s = 0;
        }
      }
    else if (a == -2)
      {
        // End of file; delete the empty vectors created when encountering the last -1 -1 row
        delete energies;
        delete ids;
        //nComponents = components.size();
      }
    else
      {
        // 1st column is shell id
        if(k%nColumns != 0)
          {         
            ids->push_back(a);
            k++;
          }
        else if (k%nColumns == 0)
          {
            // 2nd column is binding energy
            G4double e = a * MeV;
            energies->push_back(e);
            k = 1;
          }
      }
  } while (a != -2); // end of file
  file.close();    

  // For Doppler broadening: the data set contains shell occupancy and binding energy for each shell
  // Build additional map with probability for each shell based on its occupancy

  if (occupancyData)
    {
      // Build cumulative from raw shell occupancy

      for (G4int Z=zMin; Z <= zMax; Z++)
        {
          std::vector<G4double> occupancy = ShellIdVector(Z);

          std::vector<G4double>* prob = new std::vector<G4double>;
          G4double scale = 1. / G4double(Z);

          prob->push_back(occupancy[0] * scale);
          for (size_t i=1; i<occupancy.size(); i++)
            {
              prob->push_back(occupancy[i]*scale + (*prob)[i-1]);
            }
          occupancyPdfMap[Z] = prob;

          /*
            G4double scale = 1. / G4double(Z);
            //      transform((*prob).begin(),(*prob).end(),(*prob).begin(),bind2nd(multiplies<G4double>(),scale));

            for (size_t i=0; i<occupancy.size(); i++)
            {
            (*prob)[i] *= scale;
            }
          */
        }
    }
}


G4int G4RDShellData::SelectRandomShell(G4int Z) const
{
  if (Z < zMin || Z > zMax)
    G4Exception("G4RDShellData::SelectRandomShell()", "OutOfRange",
                FatalException, "Z outside boundaries!");

  G4int shellIndex = 0;    
  std::vector<G4double> prob = ShellVector(Z);
  G4double random = G4UniformRand();

  // std::vector<G4double>::const_iterator pos;
  // pos = lower_bound(prob.begin(),prob.end(),random);

  // Binary search the shell with probability less or equal random

  G4int nShells = NumberOfShells(Z);
  G4int upperBound = nShells;

  while (shellIndex <= upperBound) 
    {
      G4int midShell = (shellIndex + upperBound) / 2;
      if ( random < prob[midShell] ) 
        upperBound = midShell - 1;
      else 
        shellIndex = midShell + 1;
    }  
  if (shellIndex >= nShells) shellIndex = nShells - 1;

  return shellIndex;
}