50   secondaryCmd -> SetParameterName(
"secondary", 
true);
 
   51   secondaryCmd -> SetDefaultValue(
"true");
 
   52   secondaryCmd -> SetGuidance(
"Set if dose/fluence for the secondary particles will be written"  
   53                 "\n[usage]: /analysis/secondary [true/false]"); 
 
   57   DoseMatrixCmd->
SetGuidance(
"Write the dose/fluence to an ASCII file");
 
   64 #ifdef G4ANALYSIS_USE_ROOT 
   66   FileNameCmd->SetGuidance(
"Set the .root filename for the root-output");
 
   67   FileNameCmd->SetDefaultValue(
"default.root");
 
   68   FileNameCmd->SetParameterName(
"choice",
true); 
 
   79 #ifdef G4ANALYSIS_USE_ROOT 
   87     if (command == secondaryCmd)
 
   95     else if (command == DoseMatrixCmd) 
 
   99         pMatrix -> TotalEnergyDeposit(); 
 
  100         pMatrix -> StoreDoseFluenceAscii(newValue);
 
  101 #ifdef G4ANALYSIS_USE_ROOT 
  102         pMatrix -> StoreDoseFluenceRoot();
 
  107 #ifdef G4ANALYSIS_USE_ROOT 
  108     else if (command == FileNameCmd)